Cold denaturation of DNA origami nanostructures

Dornbusch, D.⁽¹⁾; Hanke, M.; Tomm, E.; Grundmeier, G.; Keller, A.; Fahmy, K.⁽²⁾; Kielar, C.⁽³⁾

• Chemical Communications (2024)
  Online First (2024) DOI: 10.1039/D3CC05985E⁽⁴⁾

Large-Scale Formation of DNA Origami Lattices on Silicon

Tapio, K.⁽⁵⁾; Kielar, C.⁽⁶⁾; Parikka, J. M.⁽⁷⁾; Keller, A.⁽⁸⁾; Järvinen, H.⁽⁹⁾; Fahmy, K.⁽¹⁰⁾; Jussi Toppari, J.⁽¹¹⁾

• Chemistry of Materials 35(2023)5, 1961-1971
  Online First (2023) DOI: 10.1021/acs.chemmater.2c03190⁽¹²⁾
  Cited 5 times in Scopus

Superstructure-dependent stability of DNA origami nanostructures in the presence of chaotropic denaturants

Hanke, M.; Dornbusch, D.⁽¹³⁾; Tomm, E.; Grundmeier, G.; Fahmy, K.; Keller, A.

• Nanoscale 15(2023)41, 16590-16600
  DOI: 10.1039/d3nr02045b⁽¹⁴⁾
  Cited 1 times in Scopus

Exploring Antibacterial Activity and Bacterial-Mediated Allotropic Transition of Differentially Coated Selenium Nanoparticles

Ruiz-Fresneda, M. A.; Schaefer, S.; Hübner, R.⁽¹⁵⁾; Fahmy, K.⁽¹⁶⁾; Merroun, M. L.

Involved research facilities

• Ion Beam Center DOI: 10.17815/jlsrf-3-159⁽¹⁷⁾

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• ACS Applied Materials and Interfaces 15(2023), 29958-29970
  DOI: 10.1021/acsami.3c05100⁽¹⁹⁾
  Cited 4 times in Scopus

Special Issue “Advances in Monitoring Metabolic Activities of Microorganisms by Calorimetry”

Matulis, D.; Wadsö, L.; Fahmy, K.⁽²⁰⁾

• Microorganisms 11(2023)5, 1204
  DOI: 10.3390/microorganisms11051204⁽²¹⁾

Distinct Effects of Chemical Toxicity and Radioactivity on Metabolic Heat of Cultured Cells Revealed by “Isotope-Editing”

Oertel, J.; Sachs, S.⁽²²⁾; Flemming, K.; Hassan Obeid, M.; Fahmy, K.⁽²³⁾

• Microorganisms 11(2023)3, 584
  DOI: 10.3390/microorganisms11030584⁽²⁴⁾
  Cited 1 times in Scopus

Interdisciplinary biophysical studies of membrane proteins bacteriorhodopsin and rhodopsin

Fahmy, K.⁽²⁵⁾; Sakmar, T.

• Biophysical Reviews 15(2023), 111-125
  Online First (2022) DOI: 10.1007/s12551-022-01003-y⁽²⁶⁾
  Cited 3 times in Scopus

Simple Growth–Metabolism Relations Are Revealed by Conserved Patterns of Heat Flow from Cultured Microorganisms

Fahmy, K.⁽²⁷⁾

• Microorganisms 10(2022), 1397
  DOI: 10.3390/microorganisms10071397⁽²⁸⁾
  Cited 3 times in Scopus

Anion-specific structure and stability of guanidinium-bound DNA origami

Hanke, M.; Dornbusch, D.⁽²⁹⁾; Hadlich, C.; Roßberg, A.; Hansen, N.; Grundmeier, G.; Tsushima, S.⁽³⁰⁾; Keller, A.; Fahmy, K.⁽³¹⁾

• Computational and Structural Biotechnology Journal 20(2022), 2611-2623
  Online First (2022) DOI: 10.1016/j.csbj.2022.05.037⁽³²⁾
  Cited 6 times in Scopus

Salting-Out of DNA Origami Nanostructures by Ammonium Sulfate

Hanke, M.; Hansen, N.; Ruiping, C.; Grundmeier, G.; Fahmy, K.⁽³³⁾; Keller, A.

• International Journal of Molecular Sciences 23(2022)5, 2817
  DOI: 10.3390/ijms23052817⁽³⁴⁾
  Cited 8 times in Scopus

Two Be or Not Two Be: The Nuclear Autoantigen La/SS-B Is able to form Dimers and Oligomers in a Redox Dependent Manner

Berndt, N.⁽³⁵⁾; Bippes, C. C.; Michalk, I.; Bachmann, D.; Bachmann, J.; Puentes-Cala, E.; Bartsch, T.; Loureiro, L. R.; Kegler, A.; Bergmann, R.⁽³⁶⁾; Gross, J. K.; Gross, T.; Kurien, B. T.; Scofield, R. H.; Farris, A. D.; James, J. A.; Schmitz, M.; Fahmy, K.⁽³⁷⁾; Feldmann, A.⁽³⁸⁾; Arndt, C.⁽³⁹⁾; Bachmann, M.⁽⁴⁰⁾

• International Journal of Molecular Sciences 22(2021)7, 3377
  DOI: 10.3390/ijms22073377⁽⁴¹⁾
  Cited 6 times in Scopus

DNA-Mediated Stack Formation of Nanodiscs

Subramanian, M.; Kielar, C.; Tsushima, S.⁽⁴²⁾; Fahmy, K.⁽⁴³⁾; Oertel, J.

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• Data publication: DNA-Mediated Stack Formation of Nanodiscs
  ROBIS: 33585⁽⁴⁴⁾ HZDR-primary research data are used by this (Id 32443) publication
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  ROBIS: 32927⁽⁴⁵⁾ HZDR-primary research data are used by this (Id 32443) publication

• Molecules 26(2021)6, 1647
  DOI: 10.3390/molecules26061647⁽⁴⁶⁾
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A metabolic switch regulates the transition between growth and diapause in C. elegans

Penkov, S.; Raghuraman, B. K.; Erkut, C.; Oertel, J.; Galli, R.; Ackerman, E. J. M.; Vorkel, D.; Verbavatz, J. M.; Koch, E.; Fahmy, K.; Shevchenko, A.; Kurzchalia, T. V.

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• Data for: "A metabolic switch regulates the transition between growth and …
  ROBIS: 32145⁽⁴⁷⁾ HZDR-primary research data are used by this (Id 31882) publication

• BMC Biology 18(2020), 31
  DOI: 10.1186/s12915-020-0760-3⁽⁴⁸⁾
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C. elegans possess a general program to enter cryptobiosis that allows dauer larvae to survive different kinds of abiotic stress

Gade, V. R.; Traikov, S.; Oertel, J.; Fahmy, K.; Kurzchalia, T. V.

• Scientific Reports 10(2020), 13466
  DOI: 10.1038/s41598-020-70311-8⁽⁴⁹⁾
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Calcium binding to a disordered domain of a type III-secreted protein from a coral pathogen promotes secondary structure formation and catalytic activity

Hoyer, E.; Knöppel, J.; Liebmann, M.; Steppert, M.; Raiwa, M.; Herczynski, O.; Hanspach, E.; Zehner, S.; Göttfert, M.; Tsushima, S.; Fahmy, K.; Oertel, J.

• Scientific Reports 9(2019), 7115
  DOI: 10.1038/s41598-019-42898-0⁽⁵⁰⁾
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Body size-dependent energy storage causes Kleiber’s law scaling of the metabolic rate in planarians

Thommen, A.; Werner, S.; Frank, O.; Philipp, J.; Knittelfelder, O.; Quek, Y.; Fahmy, K.; Shevchenko, A.; Friedrich, B. M.; Jülicher, F.; Rink, J. C.

• eLife 8(2019), e38187
  DOI: 10.7554/eLife.38187⁽⁵¹⁾
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DNA-encircled lipid bilayers

Iric, K.; Subramanian, M.; Oertel, J.; Agarwal, N. P.; Matthies, M.; Periole, X.; Sakmar, T. P.; Huber, T.; Fahmy, K.; Schmidt, T.-L.

• Poster
  Jahrestagung Deutsche Gesellschaft für Biophysik, 16.-19.09.2018, Düsseldorf, Deutschland
• Nanoscale 10(2018), 18463-18467
  DOI: 10.1039/C8NR06505E⁽⁵²⁾
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Layer-by-Layer assembly of heparin and peptide-polyethylene glycol conjugates to form hybrid nanothin films of biomatrices

Thomas, A. K.; Wieduwild, R.; Zimmermann, R.; Lin, W.; Friedrichs, J.; Bickle, M.; Fahmy, K.; Werner, C.; Zhang, Y.

• ACS Applied Materials and Interfaces 10(2018)17, 14264-14270
  DOI: 10.1021/acsami.8b02014⁽⁵³⁾
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Uranium(VI) complexes with a calix[4]arene-based 8-hydroxyquinoline ligand: Thermodynamic and structural characterization based on calorimetry, spectroscopy, and liquid-liquid extraction

Bauer, A.; Jäschke, A.⁽⁵⁴⁾; Schöne, S.⁽⁵⁵⁾; Barthen, R.; März, J.⁽⁵⁶⁾; Schmeide, K.⁽⁵⁷⁾; Patzschke, M.⁽⁵⁸⁾; Kersting, B.⁽⁵⁹⁾; Fahmy, K.⁽⁶⁰⁾; Oertel, J.; Brendler, V.⁽⁶¹⁾; Stumpf, T.

• ChemistryOpen 7(2018)6, 467-474
  DOI: 10.1002/open.201800085⁽⁶²⁾
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Calorimetrically determined U(VI) toxicity in Brassica napus correlates with oxidoreductase activity and U(VI) speciation

Sachs, S.; Geipel, G.; Bok, F.; Oertel, J.; Fahmy, K.

• Environmental Science & Technology 51(2017)18, 10843-10849
  Online First (2017) DOI: 10.1021/acs.est.7b02564⁽⁶³⁾
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Dipolar Relaxation Dynamics at the Active Site of an ATPase Regulated by Membrane Lateral Pressure

Fischermeier, E.; Pospíšil, P.; Sayed, A.; Hof, M.; Solioz, M.; Fahmy, K.

• Angewandte Chemie - International Edition 56(2017)5, 1269-1272
  DOI: 10.1002/anie.201611582⁽⁶⁴⁾
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Analysis of self‑assembly of S‑layer protein slp‑B53 from Lysinibacillus sphaericus

Liu, J.; Falke, S.; Drobot, B.; Oberthuer, D.; Kikhney, A.; Guenther, T.; Fahmy, K.; Svergun, D.; Betzel, C.; Raff, J.

• European Biophysics Journal 46(2017)1, 77-89
  DOI: 10.1007/s00249-016-1139-9⁽⁶⁵⁾
  Cited 15 times in Scopus

The molecular switching mechanism at the conserved D(E)RY motif in class-A GPCRs

Sandoval, A.; Eichler, S.; Madathil, S.; Reeves, P. J.; Fahmy, K.; Boeckmann, R. A.

• Biophysical Journal 111(2016)1, 79-89
  DOI: 10.1016/j.bpj.2016.06.004⁽⁶⁶⁾
  Cited 12 times in Scopus

Rational Structure-Based Rescaffolding Approach to de Novo Design of Interleukin 10 (IL-10) Receptor-1 Mimetics

Ruiz-Gómez, G.; Hawkins, J. C.; Philipp, J.; Künze, G.; Wodtke, R.; Löser, R.; Fahmy, K.; Pisabarro, M. T.

• PLOS ONE 11(2016)4, e0154046
  DOI: 10.1371/journal.pone.0154046⁽⁶⁷⁾
  Cited 2 times in Scopus

Mechanism of attenuation of uranyl toxicity by glutathione in Lactococcus lactis

Obeid, M. H.; Oertel, J.; Solioz, M.; Fahmy, K.

• Applied and Environmental Microbiology 82(2016)12, 3563-3571
  DOI: 10.1128/AEM.00538-16⁽⁶⁸⁾
  Cited 12 times in Scopus

Anisotropic metal growth on phospholipid nanodiscs via lipid bilayer expansion

Oertel, J.; Keller, A.; Prinz, J.; Schreiber, B.; Hübner, R.; Kerbusch, J.; Bald, I.; Fahmy, K.

• Scientific Reports 6(2016), 26718
  Online First (2016) DOI: 10.1038/srep26718⁽⁶⁹⁾
  Cited 7 times in Scopus

A single-strand annealing protein clamps DNA to detect and secure homology

Ander, M.; Subramaniam, S.; Fahmy, K.; Stewart, F.; Schäffer, E.

• PLOS Biology 13(2015)8, A018
  DOI: 10.1371/journal.pbio.1002213⁽⁷⁰⁾
  Cited 20 times in Scopus

The Role of Phospholipid Headgroup Composition and Trehalose in the Desiccation Tolerance of Caenorhabditis elegans

Abusharkh, S. E.; Erkut, C.; Oertel, J.; Kurzchalia, T. V.; Fahmy, K.

• Langmuir 30(2014), 12897-12906
  DOI: 10.1021/la502654j⁽⁷¹⁾
  Cited 16 times in Scopus

Filament formation by metabolic enzymes is a specific adaptation to an advanced state of cellular starvation

Petrovska, I.; Nüske, E.; Munder, M. C.; Kulasegaran, G.; Malinovska, L.; Kroschwald, S.; Richter, D.; Fahmy, K.; Gibson, K.; Verbavatz, J.-M.; Alberti, S.

• eLife 3(2014), 02409
  Online First (2014) DOI: 10.7554/eLife.02409⁽⁷²⁾
  Cited 158 times in Scopus

Paramagnetic Decoration of DNA origami Nanostructures by Eu3+ Coordination

Opherden, L.; Oertel, J.; Barkleit, A.; Fahmy, K.; Keller, K.

• Langmuir 30(2014)27, 8152-8159
  DOI: 10.1021/la501112a⁽⁷³⁾
  Cited 26 times in Scopus

Formic acid interaction with uranyl(VI) ion: structural and photochemical characterization

Lucks, C.; Roßberg, A.; Tsushima, S.; Foerstendorf, H.; Fahmy, K.; Bernhard, G.

Involved research facilities

• Rossendorf Beamline at ESRF DOI: 10.1107/S1600577520014265⁽⁷⁴⁾

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3D Profile-Based Approach to Proteome-Wide Discovery of Novel Human Chemokines

Tomczak, A.; Sontheimer, J.; Drechsel, D.; Hausdorf, R.; Gentzel, M.; Shevchenko, A.; Eichler, S.; Fahmy, K.; Buchholz, F.; Pisabarro, M. T.

• PLOS ONE 7(2012)5, e36151
  DOI: 10.1371/journal.pone.0036151⁽⁷⁷⁾
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How worms survive desiccation: Trehalose pro water

Erkut, C.; Penkov, S.; Fahmy, K.; Kurzchalia, T. V.

• Worm 1(2012)1, 61-65
  Online First (2012) DOI: 10.4161/worm.19040⁽⁷⁸⁾

Trehalose renders dauer larva of Caenorhabditis elegans resistant to extreme desiccation

Erkut, C.; Penkov, S.; Khesbak, H.; Vorkel, D.; Verbavatz, J. M.; Fahmy, K.; Kurzchalia, T. V.

• Current Biology 21(2011)15, 1331-1336

The role of water H-bond imbalances in B-DNA substate transitions and peptide recognition revealed by time-resolved FTIR spectroscopy

Khesbak, H.; Savchuk, O.; Tsushima, S.; Fahmy, K.

• Journal of the American Chemical Society 133(2011), 5834-5842

Eu³⁺-Mediated Polymerization of Benzenetetracarboxylic Acid Studied by Spectroscopy, Temperature-Dependent Calorimetry, and Density Functional Theory

Barkleit, A.; Tsushima, S.; Savchuk, O.; Philipp, J.; Heim, K.; Acker, M.; Taut, S.; Fahmy, K.

• Inorganic Chemistry 50(2011)12, 5451-5459
  DOI: 10.1021/ic102292j⁽⁷⁹⁾
  Cited 16 times in Scopus

S-Layer protein from Lysinibacillus sphaericus JG-A12 as matrix for Au-III sorption and Au-nanoparticle formation

Jankowski, U.; Merroun, M.; Selenska-Pobell, S.; Fahmy, K.

• Journal of Spectroscopy 24(2010)1-2, 177-181
  DOI: 10.3233/SPE-2010-0408⁽⁸⁰⁾
  ISSN: 0712-4813
  Cited 19 times in Scopus

Aqueous coordination chemistry and photochemistry of uranyl(VI) oxalate revisited: a density functional theory study

Tsushima, S.; Brendler, V.; Fahmy, K.

• Dalton Transactions 39(2010)45, 10953-10958
  DOI: 10.1039/C0DT00974A⁽⁸¹⁾
  Cited 28 times in Scopus

Photoluminescence of uranium(VI): quenching mechanism and role of uranium(V)

Tsushima, S.; Götz, C.; Fahmy, K.

• Chemistry - A European Journal 16(2010)27, 8029-8033
  DOI: 10.1002/chem.201000408⁽⁸²⁾
  Cited 33 times in Scopus

Heterologous expression of the S-layer-like protein SllB induces the formation of long filaments of E. coli consisting of protein stabilized outer membrane

Lederer, F.; Günther, T.; Flemming, K.; Raff, J.; Fahmy, K.; Springer, A.; Pollmann, K.

• Microbiology 156(2010), 3584-3595
  DOI: 10.1099/mic.0.040808-0⁽⁸³⁾
  Cited 8 times in Scopus

Lipid Protein Interactions Couple Protonation to Conformation in a Conserved Cytosolic Domain of G-Protein-Coupled Receptors

Madathil, S.; Fahmy, K.

• Journal of Biological Chemistry 284(2009)42, 28801-28809

Secondary Structure and Compliance of a Predicted Flexible Domain in Kinesin-1 Necessary for Co-operation of Motors

Crevenna, A. H.; Madathil, S.; Cohen, D. N.; Wagenbach, M.; Fahmy, K.; Howard, J.

• Biophysical Journal 95(2008), 5216-5227
  DOI: 10.1529/biophysj.108.132449⁽⁸⁴⁾
  Cited 18 times in Scopus

Flavonoids affect actin functions in cytoplasm and nucleus

Boehl, M.; Tietze, S.; Sokoll, A.; Madathil, S.; Pfennig, F.; Apostolakis, J.; Fahmy, K.; Gutzeit, H. O.

• Biophysical Journal 93(2007), 2765-2780
  DOI: 10.1529/biophysj.107.107813⁽⁸⁵⁾
  Cited 48 times in Scopus

Linkage between the intramembrane H-bond network around aspartic acid 83 and the cytosolic environment of helix 8 in photoactivated rhodopsin

Lehmann, N.; Alexiev, U.; Fahmy, K.

• Journal of Molecular Biology 366(2007), 1129-1141
  DOI: 10.1016/j.jmb.2006.11.098⁽⁸⁶⁾
  Cited 35 times in Scopus

Synthesis and biological evaluation of a new type of ^99mTechnetium-labeled fatty acid for myocardial metabolism imaging

Walther, M.; Jung, C.; Bergmann, R.; Pietzsch, J.; Rode, K.; Fahmy, K.; Mirtschink, P.; Stehr, S.; Heintz, A.; Wunderlich, G.; Kraus, W.; Pietzsch, H.-J.; Kropp, J.; Deussen, A.; Spies, H.

• Bioconjugate Chemistry 18(2007), 216-230
  ISSN: 10.1021/bc0601222

Secondary structure and Pd(II) coordination in S-layer proteins from Bacillus sphaericus studied by infrared and X-ray absorption spectroscopy

Fahmy, K.; Merroun, M.; Pollmann, K.; Raff, J.; Savchuk, O.; Hennig, C.; Selenska-Pobell, S.

• Biophysical Journal 91(2006)3, 996-1007
  DOI: 10.1529/biophysj.105.079137⁽⁸⁷⁾
  Cited 69 times in Scopus

Structure and pH-Sensitivity of the Transmembrane Segment 3 of Rhodopsin

Madathil, S.; Furlinski, G.; Fahmy, K.

• Biopolymers 82(2006)4, 329-333
  DOI: 10.1002/bip.20466⁽⁸⁸⁾
  Cited 2 times in Scopus

Metal binding by bacteria from uranium mining waste piles and its technological applications

Pollmann, K.; Raff, J.; Merroun, M.; Fahmy, K.; Selenska-Pobell, S.

• Biotechnology Advances 24(2006)1, 58-68
  DOI: 10.1016/j.biotechadv.2005.06.002⁽⁸⁹⁾
  Cited 144 times in Scopus

Conserved high-affinity ligand binding and membrane association in the native and refolded extracellular domain of the human glycine receptor alpha 1 subunit

Breitinger, U.; Breitinger, H.-G.; Bauer, F.; Fahmy, K.; Glockenhammer, D.; Becker, C.-M.

• Journal of Biological Chemistry 279(2004)4, 1627-1636

Properties and planned use of the intense THz radiation from ELBE at Dresden-Rossendorf

Fahmy, K.; Furlinski, G.; Gippner, P.; Grosse, E.; Seidel, W.; Sczepan, M.; Wohlfahrt, D.; Wolf, A.; Wünsch, R.

• Journal of Biological Physics 29:303 -307, 2003
• Poster
  THz-Bridge Workshop, 29.09.-01.10.2002, Capri, Italy

FTIR- and Fluorescence-Spectroscopic Analyses of Receptor G-Protein Coupling in Photoreception Curr. Org. Chem. 2002, 6, 1259-1284.

Fahmy, K.

• Curr. Org. Chem. 2002, 6, 1259-1284.