Publications Repository - Helmholtz-Zentrum Dresden-Rossendorf

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41496 Publications

A study on the desulfurization of sulfidic mine tailings for the production of a sulfurpoor residue

de Carvalho, A. L. C. B.; de Carvalho, V. A.; Blannin, R.; Escobar, A. G.; Frenzel, M.; Rudolph, M.; Silva, A. C.; Goldmann, D.

The mining industry generates large amounts of tailings every year. The most common destination for the tailings is deposition in tailings storage facilities (TSFs), which can have normous dimensions. The management and storage of such large volumes of material pose many challenges in terms of dam stability and immobilization of hazardous contaminants that represent
human-health and environmental risks, particularly for sulfide-containing materials. In addition, considerable amounts of precious and base metals can be lost in the tailings. Due to the economic value and growing industrial demand for precious and base metals, tailings may therefore be potential sources of secondary raw materials. This contribution investigates the flotation of pyrite-rich tailings, containing residual chalcopyrite, galena, and sphalerite, and high amounts of ultrafine particles. Flotation was used to recover the sulfide minerals and generate tailings with low sulfur content. The Cu-Pb-Zn-rich product could go to further treatment (e.g. (bio)hydrometallurgy) to recover the metals, while the low sulfur fraction could be used in the civil construction industry. Automated mineralogy (MLA) was used to provide quantitative mineralogical and textural data. Bench-scale experiments were performed by combining classic flotation and floc flotation (flotation of flocs of targeted minerals). Flotation of the material as received, as well as after classification into two fractions was performed. The samples as received and the coarser fraction (+37 µm) underwent classic flotation, while the finer fraction (-37 µm) was processed either by using the classic or the floc flotation approach. The flotation of the coarser particles provided higher sulfide recoveries, higher combined Cu-Pb-Zn grades in the concentrate (3.66 %), cleaner residues (1.6 % S), faster flotation rates, and a reduced reagent consumption. Likewise, the results from the fine particle flotation allowed lower S content in the residues (3.4 % S) as compared to the flotation of the original material. The results of the use of floc flotation for the finer fraction show an increase in the mass pull with a slight increase in the recovery of sulfides. Overall the development of a route to process the tailings proved to be promising and the use of a two-route approach indicates advantages as compared to a single route.

Keywords: mine waste; froth flotation; sulfidic residues; floc flotation; ultrafine particles; automated mineralogy

Permalink: https://www.hzdr.de/publications/Publ-36130


In-situ compositional and structural characterization of dc-Magnetron Sputtered CuCr₂O₄ films for high-temperature solar absorbers

Garcia Valenzuela, A.; Munnik, F.; Habenicht, C.; Naumann, T.; Hübner, R.; Krause, M.

A series of CuCr₂O₄ thin films has been successfully synthesized via a facile and cost-effective reactive Direct Current Magnetron Sputtering technique at room temperature. These coatings were deposited to evaluate their suitability as absorber material for the next generation of concentrated solar power plants [1]. The composition of the films was controlled using as key parameters the power ratio between Cu and Cr targets as well as the oxygen flux. The films deposited without intentional substrate heating were initially amorphous and needed to be annealed at 800 °C for one hour to obtain a spinel-like crystal structure [2]. RBS was used to characterize the composition of the as-deposited and annealed coatings. The structural properties were investigated by Raman spectroscopy and XRD. Structural characterization allows us to evidence that slight deviation in stoichiometry promotes the formation of secondary phases in the films. In this concern, we use in-situ Raman spectroscopy and spectroscopic ellipsometry to characterize the structural evolution of the films as a function of temperature in a controlled oxygen atmosphere. The study evidences the evolution from amorphous to fully crystallized material. Additionally, the influence of the film roughness in the optical performance of the coatings with appropriate composition was explored to enhance the optical properties of the film.

References:

1) Ramón Escobar Galindo, Matthias Krause, K. Niranjan and Harish Barshilia, in Sustainable Material Solutions for Solar Energy Technologies (ed. Mariana Fraga, Delaina Amos, Savas Sonmezoglu, Velumani Subramaniam, Elsevier, 2021).
2) Matthias Krause, Johanna Sonnenberg, Frans Munnik, Jörg Grenzer, René Hübner, Aurelio Garcia-Valenzuela, Sibylle Gemming in Materialia 18 (2021) 101156.

Keywords: Magnetron Sputtering; Solar Absorber; CuCr2O4; Raman spectroscopy; RBS

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  • Lecture (Conference)
    18th International Conference on Plasma Surface Engineering, 12.-15.09.2022, Erfurt, Deutschland

Permalink: https://www.hzdr.de/publications/Publ-36129


Modification of optoelectronic properties of TMDC monolayers by ion implantation

Prucnal, S.

The efficient integration of 2D materials, like graphene, transition metal dichalcogenides (TMDs) and h-BN into the current electronic device technology requires mastering the techniques of effective tuning of their optical, electronic and magnetic properties. It is crucial to understand how we can tune their conductivity (e.g. n-type or p-type doping), induced ferromagnetism, or valley polarization. For the conventional bulk semiconductors, ion implantation is the most developed method to do this.
In this work, we have investigated the optical and structural properties of different TMDCs modified by ion implantation. We have demonstrated the applicability of ion implantation and post-implantation non-equilibrium thermal processing for tuning the carrier concentration in 2D materials. We demonstrate p-type and n-type doping in TMDCs flakes (starting with 1 ML) realized by low-energy ion implantation of P+ and Cl+ ions through a thin capping layer followed by millisecond-range flash lamp annealing (FLA). We further show that FLA for 3 ms is enough to recrystallize implanted MoSe2 and remove ion induced defects.
The comparison between the density functional theory calculations and experimental temperature-dependent micro-Raman spectroscopy data indicates that Cl atoms are incorporated into the atomic network of MoSe2 as substitutional donor impurities. Our results clearly indicate that using our experimental approach, the conventional ion implanters can easily be used to modify the optical, electronic and magnetic properties of various 2D materials on demand

Keywords: TMDCs; ion implantation; photoluminescence; micro-Raman

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  • Lecture (Conference)
    UWr-CASUS-HZDR International Conference on Advanced Systems Research, 11.-15.07.2022, Wroclaw, Poland

Permalink: https://www.hzdr.de/publications/Publ-36128


Defect engineering in degenerate semiconductors using intense pulsed light

Prucnal, S.

The n-type doping of Ge is a self-limiting process due to the formation of vacancy-donor complexes (Dn-V with n ≤ 4) that deactivates the donors. Based on data density functional theory calculations, at temperature higher than 850 K, the concentration of D4-V clusters progressively decreases liberating unbounded vacancies and donor atoms. Next the free monovacancies are trapped by big vacancy clusters causing high activation efficiency of donors in Ge. Similar problems apply to III-V compound semiconductors, where, e.g. in GaN the p-type doping is challenging, or highly n-type layer formation in GaAs. That is mainly due to the high activation energy for acceptors, low equilibrium solid solubility and deactivation of dopants by the formation of dopant-vacancy clusters. Here, we report on experiments and theoretical calculations solving the basic problem of donors and acceptors deactivation in heavily doped semiconductors. The dissolution of donor/acceptor-vacancy clusters in heavily doped semiconductors is achieved by ms-range FLA with a peak temperature close to the melting point of the semiconductor. Positron annihilation lifetime spectroscopy (PALS) reveals that dopant-vacancy clusters are the main defect centers deactivating both acceptors and donors. Millisecond-range high-temperature treatment dissociates the dopant-V clusters and, as shown by SIMS, fully suppresses the dopant diffusion in both group IV semiconductors and III-V compound semiconductors. For the first time, using structural characterization (PALS, SIMS) and electrochemical capacitance-voltage profiling combined with DFT calculations, we were able to address, understand, and solve the fundamental problem hindering the doping of semiconductors above the solid solubility limit.

Keywords: Germanium; Flash Lamp Annealing; ion implantation; doping; III-V compound semiconductors

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  • Invited lecture (Conferences)
    Ion Implantation and Other Applications of Ions and Electrons, 27.-30.06.2022, Kazimierz Dolny, Poland

Permalink: https://www.hzdr.de/publications/Publ-36127


The influences of ferric ions and Fe as a minor element in lattice on the floatability of cassiterite

Wu, H.; Ebert, D.; Möckel, R.; Bachmann, K.; Renno, A.; Rudolph, M.

In this study, synthetic pure cassiterite and cassiterite doped with two different Fe contents were successfully recrystallized by means of sintering. Their crystal structure and chemical compositions are characterized by X-ray powder diffraction (XRD) as well as scanning electron microscopy (SEM) combined with energy-dispersive X-ray (EDX) analysis. Their floatability was studied by microflotation with a diphosphonic acid surfactant named Lauraphos301 as a collector. Unlike the addition of ferric ions in solution, which strongly depressed the floatability of all the cassiterite samples, a much higher flotation efficiency of the Fe-doped cassiterite samples was found especially at lower collector concentrations. The cassiterite floatability is proportional to the Fe content in the cassiterite at a broad range of pH, and the recovery has the following order: Cassiterite with 1417 ppm Fe > cassiterite with 1165 ppm Fe > pure cassiterite The electrokinetic behavior of the cassiterite samples with and without the collector was studied by electrophoretic measurements and revealed that the chemical interaction dominated the adsorption. With the help of the particle shape analysis, a more angular shape was found for the Fe-doped cassiterite samples. Moreover, without the influence of particle shape, much abundant adsorption of Lauraphos301 was found on the Fe-doped cassiterite samples by AFM topography imaging. The minor amount of Fe in the cassiterite lattice as well as a more angular shape of the Fe-doped cassiterite samples were believed to enhance floatability collectively. The study reveals that the influence of the chemical composition of the minerals on flotation was almost inextricably bound up with particle morphology and emphasizes the importance of considering both factors and investigating them individually for the flotation study.

Keywords: synthetic cassiterite; lattice impurities; flotation; zeta potential; diphosphonic acid surfactant

Permalink: https://www.hzdr.de/publications/Publ-36126


On the silicon-photonic route to quantum communication and computing

Berencen, Y.; Hollenbach, M.; Klingner, N.; Jagtap, N. S.; Bischoff, L.; Fowley, C.; Kentsch, U.; Hlawacek, G.; Erbe, A.; Abrosimov, N. V.; Helm, M.; Astakhov, G. V.

Indistinguishable single-photon sources at telecom wavelengths are the key photonic qubits for transmitting quantum information over long distances in standard optical fibers with minimal transmission losses and high fidelity. This enables secure quantum communication over the quantum internet and, in turn, a modular approach to quantum computing. The monolithic integration of single-photon sources with reconfigurable photonic elements and single-photon detectors in a silicon chip is a key enabling step toward demonstrating scalable quantum hardware such as quantum photonic integrated circuits (QPICs). Nowadays, nearly all the necessary components for QPICs are available such as superconducting single-photon detectors, low-loss photonic waveguides, delay lines, modulators, phase shifters, and low-latency electronics. Yet, the practical implementation of scalable quantum hardware has been largely hampered by the lack of on-chip single-photon emitters in silicon that can be created at desired locations on the nanoscale.
Here, we demonstrate two complementary wafer-level protocols for the creation of single telecom-wavelength color centers in silicon with a probability exceeding 50%. Both approaches are fully compatible with current silicon technology and enable the scalability of millions of single telecom quantum emitters that are created at desired nanoscale positions on a silicon chip. These results unlock a clear pathway for industrial-scale QPICs.

Keywords: Telecom-wavelength single-photon sources; Silicon Quantum Photonics; Focused ion beam; Ion implantation

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  • Open Access Logo Lecture (Conference)
    NanoNet+ Workshop 2022, 04.-06.10.2022, Görlitz, Germany

Permalink: https://www.hzdr.de/publications/Publ-36125


Dissolution of dopant-vacancy clusters in heavily doped semiconductors via millisecond annealing

Prucnal, S.; Liedke, M. O.; Butterling, M.; Steuer, O.; Duan, J.; Dawidowski, W.; Posselt, M.; Wang, X.; Knoch, J.; Hirschmann, E.; Hübner, R.; Georgiev, Y. M.; Wagner, A.; Helm, M.; Zhou, S.

The aggressive reduction of the channel length in transistors needs the high doping of the channel region, while the contact area requires doping beyond 1020 cm-3 to ensure low-resistance ohmic contacts. Similar problems apply to wide-band gap semiconductors where the p-type doping is challenging, mainly due to the high activation energy for acceptors, low equilibrium solid solubility and deactivation of acceptors by the formation of acceptor-vacancy clusters. Recently, we have shown that ultra-doped n-type and p-type Ge with a carrier concentration above 1020 cm-3 can be achieved by applying non-equilibrium methods like ion implantation followed by millisecond-range flash-lamp annealing (FLA) [1-3]. The n-type doping of Ge is a self-limiting process due to the formation of vacancy-donor complexes (DnV with n ≤ 4) that deactivates the donors [4]. Based on data density functional theory calculations, at temperature higher than 850 K, the concentration of D4V clusters progressively decreases liberating unbounded vacancies and donor atoms. The same effect is observed for p-type Ge and in III-V semiconductors. Here, we report on experiments and theoretical calculations solving the basic problem of donors and acceptors deactivation in heavily doped semiconductors. The dissolution of donor/acceptor-vacancy clusters in heavily doped semiconductors is achieved by ms-range FLA with a peak temperature close to the melting point of the semiconductor. Positron annihilation lifetime spectroscopy (PALS) reveals that dopant-vacancy clusters are the main defect centers deactivating both acceptors and donors. Millisecond-range high-temperature treatment dissociates the dopant-V clusters and, as shown by SIMS, fully suppresses the dopant diffusion in both group IV semiconductors and III-V compound semiconductors. For the first time, using structural characterization (PALS, SIMS) and electrochemical capacitance-voltage profiling combined with DFT calculations, we were able to address, understand, and solve the fundamental problem hindering the doping of semiconductors above the solid solubility limit.

Keywords: Germanium; ion implantation; flash lamp annealing; PALS; defects

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  • Lecture (Conference)
    19th Conference on Gettering and Defect Engineering in Semiconductor Technology, 10.-16.09.2022, Mondsee, Austria

Permalink: https://www.hzdr.de/publications/Publ-36124


Telecom-wavelength single-photon sources in silicon for scalable photonic quantum technology

Berencen, Y.; Hollenbach, M.; Klingner, N.; Jagtap, N. S.; Bischoff, L.; Fowley, C.; Kentsch, U.; Hlawacek, G.; Erbe, A.; Abrosimov, N. V.; Helm, M.; Astakhov, G. V.

Indistinguishable single-photon sources at telecom wavelengths are the key photonic qubits for transmitting quantum information over long distances in standard optical fibers with minimal transmission losses and high fidelity. This enables secure quantum communication over the quantum internet and, in turn, a modular approach to quantum computing. The monolithic integration of single-photon sources with reconfigurable photonic elements and single-photon detectors in a silicon chip is a key enabling step toward demonstrating scalable quantum hardware such as quantum photonic integrated circuits (QPICs). Nowadays, nearly all the necessary components for QPICs are available such as superconducting single-photon detectors, low-loss photonic waveguides, delay lines, modulators, phase shifters, and low-latency electronics. Yet, the practical implementation of scalable quantum hardware has been largely hampered by the lack of on-chip single-photon emitters in silicon that can be created at desired locations on the nanoscale.
Here, we demonstrate two complementary wafer-scale protocols for the quasi-deterministic creation of single G and W telecom-wavelength color centers in silicon with a probability exceeding 50%. Both approaches are fully compatible with current silicon technology and enable the fabrication of single telecom quantum emitters at desired nanoscale positions on a silicon chip. These results unlock a clear and easily exploitable pathway for industrial-scale photonic quantum processors with technology nodes below 100 nm.

Keywords: Telecom-wavelength single-photon sources; Silicon Quantum Photonics; Focused ion beam; Ion implantation

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  • Invited lecture (Conferences)
    2022 E-MRS Fall Meeting / Symposium I: Group-IV semiconductor materials for nanoelectronics and cryogenic electronics, 19.-22.09.2022, Warsaw University of Technology, Poland

Permalink: https://www.hzdr.de/publications/Publ-36123


Characterization of fully silicided source/drain SOI UTBB nMOSFETs at cryogenic temperatures

Han, Y.; Xi, F.; Allibert, F.; Radu, I.; Prucnal, S.; Bae, J.-H.; Hoffmann-Eifert, S.; Knoch, J.; Grützmacher, D.; Zhao, Q.-T.

In this paper we present an experimental study of SOI UTBB n-MOSFETs at cryogenic temperatures. The device employs fully silicided source/drain with dopant segregation formed by “Implantation Into Silicide” (IIS) process. The impact of the back-gate (Vback) on the device performance is systematically investigated. The results demonstrate that Vback is essential to tune the threshold voltage Vth. And optimization of Vback values can improve the subthreshold swing (SS), Drain-Induced Barrier Lowering (DIBL), transconductance Gm and mobility at cryogenic temperatures, providing a potential to fulfill the ultra-low power requirement for quantum computing application.

Keywords: SOI; ion implantation; n-MOSFET

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Permalink: https://www.hzdr.de/publications/Publ-36122


U7Co 3d impurity energy level mediated photogenerated carriers transfer in Bi2S3/ZnS:Co/TiO2 photoanode

Yu, Z.; Guo, H.; Sun, Z.; Li, Y.; Liu, Y.; Yang, W.; Zhu, M.; Jin, H.; Li, Y.; Feng, L.; Li, S.; Prucnal, S.; Li, W.

Photogenerated carriers' transfer efficiency as one of the most important criteria determines the efficiency of a photoanode for photoelectrochemical (PEC) water splitting. Energy barrier-free charge transfer of photogenerated carriers is achieved in a core–shell heterostructure of Bi2S3/ZnS:Co/TiO2, in which the arrayed TiO2 nanorods are covered with the Co doped ZnS inner layer and the Bi2S3 outer layer. The dual-shell structure ensures high photoconversion efficiency in PEC water splitting. The impurity energy state of Co in ZnS connects the conduction band edges of Bi2S3 and TiO2 to convey photogenerated electrons, without electrons hopping to Zn orbits at higher energy positions. The ABPE value of 1.07% at 1.23 V vs. RHE demonstrates the improved photoconversion efficiency of Bi2S3/ZnS:Co/TiO2 heterostructure. This work offers a photoanode construction strategy for the enhancement of the PEC water splitting via introducing impurity energy states at interlayer for barrier-free photogenerated charge migrating.

Keywords: nanowires; photoelectrochemical water splitting; doping; TiO2

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Permalink: https://www.hzdr.de/publications/Publ-36121


Proposition of a bubble-particle attachment model based on DLVO van der Waals and electric double layer interactions for froth flotation modelling

Buchmann, M.; Öktem, G.; Rudolph, M.; van den Boogaart, K. G.

The attachment of bubbles and particles represents one of the sub-processes in froth flotation among others (e.g. collision and detachment). The main interactions present at short distances in such a bubble-particle system are the van der Waals and electrostatic double layer interactions combined in the DLVO theory. In this study, the special features of the attachment process were discussed with a focus on flotation. For the van der Waals interactions, the Hamaker constants were calculated with the help of Lifshitz´ macroscopic theory as a function of the separation distance for specific material combinations. A specific material system (PbS-Water-Air) was used to demonstrate the implementation of bubble-particle attachment of the proposed modelling framework. The effects of additional surfactant/collector and air layers on the solid interface were presented. This framework of layered systems showed that the sign of van der Waals interaction could be turned from repulsive to attractive without the need to extend the DLVO theory. The thickness of the layer as a function of collector adsorption between a particle and a bubble is suggested as a modelling parameter in bubble-particle attachment efficiency.

Keywords: attachment; froth flotation; Hamaker constant; surfactants; collectors; hydrophobic interaction

Permalink: https://www.hzdr.de/publications/Publ-36120


Optimizing Laser-Wakefield accelerator performance by varying gas density profiles using PIC codes

Günzl, J.

Laser-wakefield accelerators, providing high-energy electrons on a small scale, are promising alternatives to conventional particle accelerators. High field gradients in the regime of several GeV/m grant significant energy gain already in the range of millimeters and therefore table-top applications of LWFA are feasible.
Nevertheless, improving the beam quality is essential for future applications. With the development of particle-in-cell (PIC) algorithms, a time resolved analysis of plasma based accelerators became available, providing a steady optimisation potential of the electron beam. Using the PIC code PIConGPU, the influence of a density down-ramp on the characteristic Courant-Snyder parameters and the evolution fundamental beam properties is presented in this work. Through the visualisation of these quantities on the millimeter scale of the plasma, the oscillation of the beam parameters and the expansion of the beam waist in the down-ramp region can be demonstrated and furthermore, the average energy and total amount of charge in the main electron bunch is determined at the end of each plasma stage.
Thus, a detailed discussion of the down-ramp influence on the Courant-Snyder parameters, the bunch-charge and the beam energy, is provided for every simulation. Comparing the results with a reference simulation reveals optimisation possibilities of all mentioned parameters.
It is shown, that a perfectly matched beam is not yet reached for the assumed setup, but still an optimal density profile, combining low beam divergence and high energy and bunch charge, is suggested in the end of this work.

Keywords: LWFA; PIConGPU

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  • Draco
  • Bachelor thesis
    TU Dresden, 2022
    Mentor: Richard Pausch
    56 Seiten

Permalink: https://www.hzdr.de/publications/Publ-36119


Soft X-ray absorption study of sputtered tin oxide films

Gago, R.; Prucnal, S.; Azpeitia, J.; Esteban-Mendoza, D.; Jiménez, I.

The bonding structure of tin oxide (SnOx) films grown by reactive DC magnetron sputtering has been studied by the combination of X-ray diffraction (XRD) and soft X-ray absorption near-edge structure (XANES). The oxygen incorporation in the films has been controlled by the O2 partial pressure (PO2) in the O2/Ar discharge mixture. In addition, the impact of substrate heating and post-deposition flash lamp annealing (FLA) on crystal growth has been studied. In general, it has been stablished a transition from SnO to SnO2 arrangements by increasing PO2, where XRD and XANES provide complementary results about the formation of single- and mixed-phase films. In samples produced at room temperature, XANES gives unique information about such structural evolution, as well as related to defects like the incorporation of O2 molecules at high PO2. FLA on samples grown at room temperature promotes crystal growth and the phase evolution follows the initial structural selectivity. Finally, the optical properties and surface morphology of the films have been correlated with the structural identification.

Keywords: SnO; Flash Lamp Annealing; soft X-ray; metal oxides

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Permalink: https://www.hzdr.de/publications/Publ-36118


Evaluating tractography algorithms for pre-surgical evaluation of patients with epilepsy

Hirche, E.

Tractography is a method that can be seen as a supplement to conventional imaging modalities of the brain. It is of relevance to different research and clinical areas, including pre-surgical planning for epilepsy. Although tractography was heavily researched in the past, there is no gold standard for algorithms, processing or interpretation of results. For reliable practical usage, better methods for calibrations of parameters have to be found.
This thesis aims to provide information about parameters of two different tractography algorithms, by determining the sensitivity of connectivity, measured as weighted streamline counts and the sensitivity of low-level geometry, measured as streamline densities and main tract directions, towards parameter variations. The analysis is done locally, using a reference constellation of parameters that made use of default values proposed by other researchers and a small prior qualitative assessment.
Analysis was successful for the parameters "cutoff" and "maximum fiber length" of the algorithm iFOD2, but showed several limitations for other parameters. In contrast, the parameters "maximum attempts" and "trials" of iFOD2 did not affect connectivity on a local scale more than chance. Similarly, the parameters "start temperature", "end temperature" and "iterations" of the Global Gibbs tractography were found to be irrelevant for both connection and low-level geometry. These findings may allow for dimensionality reduction. However, this would have to be confirmed through further investigation.

Keywords: Tractography; Neuroscience; Pre-surgical evaluation; Epilepsy; Visualization; Connectomics

  • Bachelor thesis
    TU Dresden, 2022
    Mentor: Prof. Ivo F. Sbalzarini; Prof. Stefan Kiebel. Dr. Ulrik Günther
    154 Seiten

Permalink: https://www.hzdr.de/publications/Publ-36117


The Protein Forge - Interactive Building of Polypeptides

Bürger, J.

Proteins carry out the algorithms of life. As such, they play an integral role in Systems biology. Given the rapid development of Systems biology, understanding biological processes at a molecular level has become more important to other disciplines, like medicine, as well. Yet, current didactic methods often fail to teach their students biochemistry effectively. We present the Protein Forge, a Virtual Reality application that aims to help primarily medical students to identify amino acids, the building blocks of proteins, and to teach them how those amino acids are chemically linked. The program follows a predefined workflow: its user identifies amino acids from a naturally occurring protein sequence one after the other. When choosing the right amino acid, the user is presented with an animation, showing the formation of a peptide bond, i.e., the bond between two amino acids. The program was implemented in scenery, an open-source framework for rendering VR scenes. To display amino acids, we developed a rudimentary molecular viewer for scenery, consisting of a data structure to store the molecule data and an algorithm to determine the atom positions in space for a given molecule. A video of the experience can be found here:https://cloudstore. zih.tu-dresden.de/index.php/s/JB898wJFgp2r6fT, the respective code here: https:// github.com/scenerygraphics/scenery/tree/peptide_chain.

Keywords: Proteins; Visualization; Education; Virtual Reality; Structural Biology

  • Bachelor thesis
    TU Dresden, 2022
    Mentor: Prof. Matthew McGinity; Prof. Ivo F. Sbalzarini, Dr. Ulrik Günther
    55 Seiten

Permalink: https://www.hzdr.de/publications/Publ-36116


trx-jvm - A library for reading TRX tractography files for the Java VM

Günther, U.; Notaro, C.; Bürger, J.

trx-jvm is a library implementing TRX (say, tee-ar-ex) file reading for JVM-based languages. TRX is a novel, open-source format for storing tractography data. trx-jvm was written with performance in mind, and uses imglib2 CellImgs for large array storage and access. It is able to parse and load a 4 GiB TRX file with 500000 streamlines in about 18 seconds on a standard notebook.

Keywords: Tractography; Visualization; Streamlines; Neuroscience

  • Software in external data repository
    Publication year 2022
    Programming language: Kotlin
    System requirements: Windows, Linux, macOS
    License: MIT License
    Hosted on Github: Link to location

Permalink: https://www.hzdr.de/publications/Publ-36115


Content-adaptive generation and parallel compositing of volumetric depth images for responsive visualization of large volume data

Gupta, A.; Incardona, P.; Hunt, P.; Reina, G.; Frey, S.; Gumhold, S.; Günther, U.; Sbalzarini, I. F.

We present a content-adaptive generation and parallel compositing algorithm for view-dependent explorable representations of large three-dimensional volume data. Large distributed volume data are routinely produced in both numerical simulations and experiments, yet it remains challenging to visualize them at smooth, interactive frame rates. Volumetric Depth Images (VDIs), view-dependent piece wise-constant representations of volume data, offer a potential solution: they are more compact and less expensive to render than the original data. So far, however, there is no method to generate such representations on distributed data and to automatically adapt the representation to the contents of the data. We propose an approach that addresses both issues by enabling sort-last parallel generation of VDIs with content-adaptive parameters. The resulting VDIs can be streamed for display, providing responsive visualization of large, potentially distributed, volume data.

Keywords: Visualization; Volume rendering; Parallel computing; Volumetric depth images

  • Contribution to WWW
    arXiv: https://arxiv.org/abs/2206.14503
    DOI: 10.48550/arXiv.2206.14503
    arXiv: 2206.14503
  • Open Access Logo Contribution to proceedings
    EGPGV23: Eurographics Symposium on Parallel Graphics and Visualization, 12.06.2023, Leipzig, Deutschland
    Parallel Compositing of Volumetric Depth Images for Interactive Visualization of Distributed Volumes at High Frame Rates
    DOI: 10.2312/pgv.20231082

Permalink: https://www.hzdr.de/publications/Publ-36114


Efficient Raycasting of View-Dependent Piecewise Constant Representations of Volumetric Data

Gupta, A.; Günther, U.; Incardona, P.; Reina, G.; Frey, S.; Gumhold, S.; Sbalzarini, I. F.

We present an efficient raycasting-based rendering algorithm for view-dependent piecewise constant representations of volumetric data. Our algorithm leverages the properties of perspective projection to simplify intersections of rays with the view-dependent frustums that form part of these representations. It also leverages spatial homogeneity in the underlying volume data to minimize memory accesses. We further introduce techniques for skipping empty-space and for dynamic subsampling for accelerated approximate renderings at controlled frame rates. Benchmarks show that responsive frame rates can be achieved close to the viewpoint of generation for HD display resolutions, while providing high-fidelity approximate renderings of Gigabyte-sized volumes.

Keywords: Visualization; Volume rendering; Raycasting

Permalink: https://www.hzdr.de/publications/Publ-36113


Corvo: Visualizing CellxGene Single-Cell Datasets in Virtual Reality

Hyman, L.; Sbalzarini, I. F.; Quake, S.; Günther, U.

The CellxGene project has enabled access to single-cell data in the scientific community, providing tools for browsed-based no-code analysis of more than 500 annotated datasets. However, single-cell data requires dimensional reduction to visualize, and 2D embedding does not take full advantage of three-dimensional human spatial understanding and cognition. Compared to a 2D visualization that could potentially hide gene expression patterns, 3D Virtual Reality may enable researchers to make better use of the information contained within the datasets. For this purpose, we present \emph{Corvo}, a fully free and open-source software tool that takes the visualization and analysis of CellxGene single-cell datasets to 3D Virtual Reality. Similar to CellxGene, Corvo takes a no-code approach for the end user, but also offers multimodal user input to facilitate fast navigation and analysis, and is interoperable with the existing Python data science ecosystem. In this paper, we explain the design goals of Corvo, detail its approach to the Virtual Reality visualization and analysis of single-cell data, and briefly discuss limitations and future extensions.

Keywords: Single-cell data; Virtual Reality; Visualization; CellxGene

Permalink: https://www.hzdr.de/publications/Publ-36112


Masses of compact (neutron) stars with distinguished cores

Zöllner, R.; Ding, M.; Kämpfer, B.

The impact of the core mass on the compact/neutron-star mass-radius relation is studied.
Besides the mass, the core is parameterized by its radius and surface pressure, which supports the outside one-component Standard Model (SM) matter.
The core may accommodate SM matter with unspecified (or poorly known) equation-of-state or several components, e.g.\ consisting of admixtures of Dark Matter and/or Mirror World matter etc.\ beyond the SM. Thus, the admissible range of masses and radii of compact stars can be considerably extended.

Keywords: compact stars; core-corona decomposition; impact of core mass; Dark-Matter admixture

Permalink: https://www.hzdr.de/publications/Publ-36111


Performance Portable Reconstruction of Ptychography Data with the Alpaka C++ Library

Ehrig, S.; Vyskocil, J.; Achilles, S.; Weber, D.; Clausen, A.; Müller-Caspary, K.; Schropp, A.; Schroer, C.; Hoffmann, N.; Bussmann, M.

Ptychography is a computational imaging method used to numerically retrieve the projection of an object from a set of measured diffraction patterns. Each diffraction pattern represents a partially overlapping area of the object. The corresponding inverse problem, i.e. the image reconstruction, can be solved by projection-based or gradient-based algorithms. However, existing implementations are usually optimized for a specific system and therefore difficult to port to new systems. To solve this problem, we will be introducing the alpaka library with a generic C++ interface to implement an algorithm one time and execute it on different target platforms, like CPUs and GPUs from different vendors. First, we ported an existing algorithm, implemented in CUDA C++, to alpaka to demonstrate the workflow and advantages. Then, we implemented another algorithm from scratch to obtain the software requirements for an easy and fast development cycle of alpaka based image reconstruction applications.

Keywords: ptychography; imaging; gpu; cuda; performance portability; numerical methods; image reconstruction; real-time algorithms

  • Poster
    Performance Portable Reconstruction of Ptychography Data with the Alpaka C++ Library, 31.05.-01.06.2022, Berlin, Deutschland

Permalink: https://www.hzdr.de/publications/Publ-36110


CASUS Professional Support Team

Pöschel, F.; Kotik, D.; Vyskocil, J.; Barbieri, G.

Software engineers form the CASUS Professional Support Team from diverse scientific backgrounds, including computer science, data science, and physics. With this team, the CASUS institute provides an appropriate setting for the sustainable and long-term development of scientific software, rather than being bound to the lifetime and funding of single projects.
For a digital institute focused on a cross-domain exploration of complex systems – often only possible by computational means – putting software engineering at eye level with research ensures a reliable base of high-quality software. We emphasize open-source solutions, reusability, documentation, and portability, as well as on F.A.I.R. data.
The Professional Support Team is involved in numerous in-house and cross-institutional projects:
The scientific Python packages MALA and atoMEC are supported in the long term by code reviews, documentation generation, package management and continuous integration.
The performance-portability framework Alpaka has given established physics simulations such as PIConGPU the chance to port to next-gen Exascale HPC systems such as ORNL Frontier. It is also used by emerging simulation and data analysis projects at CERN.
The pandemic research platform Where2Test consists of several web applications linked to a central database containing current epidemiologic data. Predictions calculated on the HPC cluster are automatically post-processed and published online.
Open software attracts collaboration, as the scientific I/O library openPMD-api shows, developed in collaboration between CASUS and LBNL and used by numerous scientific projects in Europe and America.
With OPTIMA and PIONEER cloud-based platforms, the CASUS institute provides data access and analytic capabilities for researchers and pharmaceutical companies in a federated way.
The poster shows the diverse skills found within the Professional Support Team, representing the interdisciplinary nature of CASUS, and briefly introduces the projects our team is involved in.

Keywords: professional support; sustainable software; software engineering; data management

  • Poster
    Big data analytical methods for complex systems, 06.-07.10.2022, Wrocław, Polska

Permalink: https://www.hzdr.de/publications/Publ-36109


Die Zukunft ist rund!

Jentzsch, A.-K.; Pereira, T.; Gutzmer, J.; Raatz, S.; Gloaguen, R.; Rudolph, M.; Bachmann, K.; Büttner, P.; Lorenz, S.; Schach, E.

Broschüre des Helmholtz-Instituts Freiberg für Ressourcentechnologie anlässlich seines 10-jährigen Bestehens im Jahr 2021. Die Broschüre resümiert die wissenschaftliche und quantitative Entwicklung des Instituts von der Gründung im Jahr 2011 bis 2021. Die Beiträge geben einen Überblick über die verschiedenen Kernkompetenzen des Instituts sowie über Highlight-Projekte. Darüber hinaus wird ein Ausblick auf zukünftige Entwicklungen und Projekte gegeben.

Keywords: Kreislaufwirtschaft; Rohstoffe; Bergbau; Ressourcen; Freiberg

  • Open Access Logo Communication & Media Relations
    Broschüre 01.09.2021
    52 Seiten

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Permalink: https://www.hzdr.de/publications/Publ-36108


The Future is Circular!

Jentzsch, A.-K.; Pereira, T.; Gutzmer, J.; Raatz, S.; Gloaguen, R.; Rudolph, M.; Bachmann, K.; Lorenz, S.; Büttner, P.; Schach, E.

Brochure of the Helmholtz Institute Freiberg für Resource Technology on occasion of its 10th anniversary in 2021. The brochure resumes the scientific and quantitative development of the institute from its foundation in 2011 to 2021. The articles give an overview on the various key competencies of the institute as well as on highlight projects. Furthermore an outlook on future developents and projects is given.

Keywords: Circular Economy; Raw Materials; Mining; Resources; Freiberg; HIF

  • Open Access Logo Communication & Media Relations
    Brochure 01.09.2021
    52 Seiten

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Permalink: https://www.hzdr.de/publications/Publ-36107


Minterpy - multivariate polynomial interpolation

Hernandez Acosta, U.; Thekke Veettil, S. K.; Wicaksono, D. C.; Michelfeit, J.; Hecht, M.

minterpy is an open-source Python package for a multivariate generalization of the classical Newton and Lagrange interpolation schemes as well as related tasks. It is based on an optimized re-implementation of the multivariate interpolation prototype algorithm (MIP) by Hecht et al.1 and thereby provides software solutions that lift the curse of dimensionality from interpolation tasks. While interpolation occurs as the bottleneck of most computational challenges, minterpy aims to free empirical sciences from their computational limitations.

Keywords: multivariate interpolation; multivariate polynomials; numerical modelling

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Permalink: https://www.hzdr.de/publications/Publ-36106


Analysis and application of rotating baffle distributors for distillation in a two-rotor rotating packed bed

Pyka, T.; Menne, N.; Koop, J.; Bieberle, A.; Schubert, M.; Held, C.; Schembecker, G.

Liquid maldistribution causes severe loss of separation performance in packed distillation columns. Thus, the investigation of liquid distribution is of particular interest in academia and industry, especially the initial liquid distribution. Liquid maldistribution is present not only in packed distillation columns but also in process intensification equipment such as rotating packed beds (RPBs), which may be operated with metal foam packings. The loss of separation performance is severe especially in multi-rotor RPBs with single-block packing as these lack in liquid distributors in the lower rotor(s). Conventional liquid distribution via nozzles is difficult to implement in the lower rotors. For this reason, a liquid distributor for the lower rotors has been developed and denoted ‘rotating baffle distributor’ (RBD). The RBD resembles a rotary atomizer and is directly mounted to the rotor.

In summary, the RBD design was successfully applied in a 2 rotor RPB in combination with a liquid collector at the intermediate floor. We present a proven concept of numbering up rotors in RPB machines to accomplish separations that cannot be performed in a single rotor due to the limiting number of theoretical stages.

Keywords: two-rotor rotating packed bed; separation performance in distillation; gamma-ray computed tomography

Involved research facilities

  • TOPFLOW Facility
  • Contribution to proceedings
    8th European Process Intensification Conference, 31.05.-02.06.2023, Warschau, Polen

Permalink: https://www.hzdr.de/publications/Publ-36105


Investigation of beam quality enhancement with tailored down-ramp profiles in laser wakefield accelerators using particle-in-cell simulations

Günzl, J.; Pausch, R.; Bastrakov, S.; Bussmann, M.; Chang, Y.-Y.; Couperus, J.; Irman, A.; Schöbel, S.; Steiniger, K.; Widera, R.; Schramm, U.; Debus, A.

Electrons from laser wakefield accelerators (LWFA) can be ultrashort and quasi-monoenergetic. They have the potential to be an ideal source for advanced light sources or beam drivers for hybrid laser-plasma wakefield accelerators (LPWFA). A wide variety of injection methods have already been developed to produce high-quality LWFA electrons. However, such high-quality electron bunches may degrade upon exiting the LWFA stage.

This poster addresses quality-preserving methods for extracting electron beams from laser wakefield accelerators by adjusting the plasma density of the down ramp. By modeling different gas profiles with the fully relativistic particle-in-cell code PIConGPU, not only the final beam quality but also all relevant physical effects can be studied in detail. This allows not only to find an optimal quality-preserving down ramp but also to study the influence of changes in laser focus position on beam properties during extraction.

Keywords: LWFA; PIConGPU; divergence

Involved research facilities

  • Draco
  • Lecture (Conference) (Online presentation)
    DPG-Frühjahrstagung, 28.03.-01.04.2022, Mainz / virtuell, Deutschland

Permalink: https://www.hzdr.de/publications/Publ-36104


Towards axial heterostructures with atomically-sharp interfaces in self-catalyzed nanowires

Hilliard, D.; Tauchnitz, T.; Hübner, R.; Schneider, H.; Helm, M.; Dimakis, E.

Axial heterostructures have diverse functionality in electronic and optoelectronic devices. Implementing such systems in freestanding semiconducting nanowires further broadens the scope of potential applications, for example: distributed Bragg reflectors, high-efficiency light-emitting diodes, and quantum dot heterostructures. The challenge, however, lies in reducing the compositional grading effect of the constituent heterostructure materials across the interfaces in nanowires grown in vapor-liquid-solid mode.
Here, our previously developed nanowire growth technique called droplet-confined alternate pulsed-epitaxy [1] (an adaptation of conventional molecular beam epitaxy), which grants precise control over the axial growth rate and droplet composition, is employed to grow Al(x)Ga(1-x)As axial insertions in self-catalyzed GaAs nanowires. A full nanowire with six insertions is shown in Figure 1 (top). High-angle annular dark-field scanning transmission electron microscopy (HAADF-STEM) and nanowire growth models are utilized to gain an understanding of the compositional grading mechanism and its dependence on the growth temperature (TG), the nanowire radius (RNW), and the amount of supplied Al. Figure 1 (bottom) is an example HAADF-STEM image showing two atomically resolved Al(x)Ga(1-x)As insertions embedded in a zincblende GaAs nanowire, whereas Figure 2 shows the extracted Al-content (x) axial profiles for three selected insertions with different TG and RNW (the same amount of supplied Al). We show that lower TG and/or smaller RNW result in sharper interfaces, with a more profound improvement for the AlxGa1-xAs-to-GaAs interface. In the best case, almost symmetric insertions with interface thicknesses of only 2 – 3 monolayers are achieved, approaching the absolute limit of atomically sharp interfaces.
Thermodynamics, kinetics, and nanowire geometry are all factors considered during the formation of our Al(x)Ga(1-x)As insertions. Using two existing heterostructure growth models [2, 3] to fit our experimental data we can extract valuable quantitative information regarding the interface characteristics. Our results show for the first time that not only TG, but also size effects, i.e. a decreasing RNW, play a large role in the thermodynamic stability at the liquid-solid interface, setting previously unknown limitations on the maximum attainable interface sharpness. These findings and their implications will be discussed in detail.
The functionality of our insertions is successfully tested via their employment as axial barriers in quantum dot nanowire heterostructures. By growing the quantum dot heterostructure at 350 °C, consequently sharpening the quantum dot interfaces, we observe a one order of magnitude decrease in quantum dot emission linewidth (Figure 3) in comparison to a similar system grown at 550 °C.
1. Balaghi et al., Nano Lett. 16, 4032 (2016)
2. Luna et al., Phys. Rev. Lett. 109, 126101 (2012)
3. Priante et al., Nano Lett. 16, 1917 (2016)

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  • Lecture (Conference)
    CSW 2022, 01.-03.06.2022, Ann Arbor, United States of America

Permalink: https://www.hzdr.de/publications/Publ-36102


Enhancing the interface sharpness of axial heterostructures in self-catalyzed nanowires

Hilliard, D.; Tauchnitz, T.; Hübner, R.; Schneider, H.; Helm, M.; Dimakis, E.

Axial heterostructures have diverse functionality in electronic and optoelectronic devices. Implementing such systems in freestanding semiconducting nanowires further broadens the scope of potential applications, for example: distributed Bragg reflectors, high-efficiency light-emitting diodes, and quantum dot heterostructures. The challenge, however, lies in reducing the compositional grading effect of the constituent heterostructure materials across the interfaces in nanowires grown in vapor-liquid-solid mode.
Here, our previously developed nanowire growth technique called droplet-confined alternate pulsed-epitaxy [1] (an adaptation of conventional molecular beam epitaxy), which grants precise control over the axial growth rate and droplet composition, is employed to grow Al(x)Ga(1-x)As axial insertions in self-catalyzed GaAs nanowires. High-angle annular dark-field scanning transmission electron microscopy (HAADF-STEM) and nanowire growth models are utilized to gain an understanding of the compositional grading mechanism and its dependence on the growth temperature (TG), the nanowire radius (RNW), and the amount of supplied Al. Figure 1 (a) is an example HAADF-STEM image showing two Al(x)Ga(1-x)As insertions embedded in a zincblende GaAs nanowire, whereas Figure 1 (b) shows the extracted Al-content (x) axial profiles for three selected insertions with different TG and RNW (the same amount of supplied Al). We show that lower TG and/or smaller RNW result in sharper interfaces, with a more profound improvement for the AlxGa1-xAs-to-GaAs interface. In the best case, almost symmetric insertions with interface thicknesses of only 2 – 3 monolayers are achieved, approaching the absolute limit of atomically sharp interfaces. The fitting of our experimental data with existing heterostructure growth models [2, 3] is suggestive of different mechanisms behind the compositional grading of the two interfaces and will be discussed in detail.
The functionality of our insertions is successfully tested via their employment as axial barriers in quantum dot nanowire heterostructures. By growing the quantum dot heterostructure at 350 °C, consequently sharpening the quantum dot interfaces, we observe a one order of magnitude decrease in quantum dot emission linewidth (Figure 1 (c)) in comparison to a similar system grown at 550 °C.
[1] Balaghi et al., Nano Lett. 16, 4032 (2016)
[2] Luna et al., Phys. Rev. Lett. 109, 126101 (2012)
[3] Priante et al., Nano Lett. 16, 1917 (2016)

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  • Poster
    Nanowire Week 2022, 25.-29.04.2022, Chamonix, France

Permalink: https://www.hzdr.de/publications/Publ-36101


Field-tunable Berezinskii-Kosterlitz-Thouless correlations in a quasi-2D spin-1/2 Heisenberg lattice

Kühne, H.

Für diesen eingeladenen Vortrag zum Tokyo-Dresden NMR meeting: from quantum magnets to Weyl-Dirac fermions liegt keine Kurzfassung vor.

Involved research facilities

  • High Magnetic Field Laboratory (HLD)
  • Invited lecture (Conferences)
    Tokyo-Dresden NMR meeting: from quantum magnets to Weyl-Dirac fermions, 09.11.2022, Dresden, Deutschland

Permalink: https://www.hzdr.de/publications/Publ-36100


Two-axis rotator “Rotax”: Out of the lab – for the lab

Kühne, H.

Für diesen eingeladenen Vortrag zur International Conference on Strongly Correlated Electron Systems (SCES) 2022 liegt keine Kurzfassung vor.

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  • High Magnetic Field Laboratory (HLD)
  • Invited lecture (Conferences)
    International Conference on Strongly Correlated Electron Systems (SCES) 2022, 24.-29.07.2022, Amsterdam, The Netherlands

Permalink: https://www.hzdr.de/publications/Publ-36099


Magnetism and Metamagnetism: The anomalous Hall effect

Helm, T.

Für diesen Vortrag im Rahmen der zweiten EMFL summer school "Science in High Magnetic Fields" liegt keine Kurzfassung vor.

Involved research facilities

  • High Magnetic Field Laboratory (HLD)
  • Invited lecture (Conferences)
    2nd EMFL summer school "Science in high magnetic fields", 21.-25.09.2022, Kerkrade, The Netherlands

Permalink: https://www.hzdr.de/publications/Publ-36098


Copper Complexes of Silicon Pyridine-2-olates RSi(pyO)₃ (R = Me, Ph, Bn, Allyl) and Ph₂Si(pyO)₂

Seidel, A.; Gericke, R.; Brendler, E.; Wagler, J.

The organosilicon pyridine-2-olates 1a–1d (RSi(pyO)₃, R = Me (a), Ph (b), Bn (c), Allyl (d); pyO = pyridine-2-olate) may serve as tripodal ligands toward CuCl with formation of complexes of the type RSi(μ²-pyO)₃CuCl (2a–2d). In addition, for R = Allyl, formation of the more stable isomer 2d′ (κO-pyO)Si(μ²-pyO)₂(μ²-Allyl)CuCl was observed. In the presence of dry air (as a source of oxygen), reactions of 1a–1d and CuCl afforded Cu(II) complexes RSi(μ²-pyO)₄CuCl (3a–3d); 3a–3c in good yield, and 3d only as a side product. Reaction of Ph₂Si(pyO)₂ (4) and CuCl in equimolar ratio afforded, depending on reaction conditions, a series of (CuCl)n-ladder-type oligonuclear Cu(I) complexes Ph₂Si(μ2-pyO)₂(CuCl)n(μ²-pyO)₂SiPh₂ (n = 2 (52), 3 (53), 4 (54)). In all of the above compounds, the pyO group is Si–O bound and, in the case of μ² coordination, Cu–N bound. All new compounds (1c, 1d, 2b, 2c, 2d, 2d′, 3b, 3c, 3d, 52, 53, 54) were characterized by single-crystal X-ray diffraction, and further characterization includes solution ¹H, ¹³C, ²⁹Si NMR spectroscopy (1c, 1d, 2b, 2c, 2d’, 53, 54), solid-state ²⁹Si (2b, 2c, 2d′, 53, 54) and ⁶³Cu NMR spectroscopy (2c, 2d′) as well as computational analyses of the isomerization of the couple 2d, 2d′.

Keywords: allyl complex; 2-hydroxypyridine; hypercoordination; 63Cu NMR spectroscopy; organosilanes; paddlewheel complex; quantum chemical calculations; X-ray diffraction

Permalink: https://www.hzdr.de/publications/Publ-36097


Investigating novel hybrid LPWFA accelerators using start-to-end PIConGPU simulations

Pausch, R.; Couperus, J. P.; Schoebel, S.; Steiniger, K.; Bussmann, M.; Chang, Y. Y.; Ding, H.; Döpp, A.; Foerster, M.; Gilljohann, M. F.; Haberstroh, F.; Heinmann, T.; Knetsch, A.; Köhler, A.; Kononenko, O.; Kurz, T.; Nutter, A.; Raj, G.; Ufer, P.; Corde, S.; Hidding, B.; Karsch, S.; Martinez De La Ossa, A.; Assmann, R.; Schramm, U.; Irman, A.; Debus, A.

The use of accelerated electrons from a laser wakefield accelerator (LWFA) as drivers of a plasma wakefield stage (PWFA) provides compact PWFAs that can serve as a test bed for the efficient investigation and optimization of PWFAs and their development into brightness boosters. Such hybrid accelerators have been experimentally realized at HZDR and LMU to study novel injection schemes. To better understand the microscopic, nonlinear dynamic of these accelerators, the experiments were accompanied by 3D3V particle-in-cell simulations using PIConGPU.

Here, we present the latest results from these numerical studies, covering injections due to hydrodynamic shocks, beam self-modulation and breakup, and cavity elongation - all accompanied by synthetic diagnostic methods that allow direct comparison with experimental measurements.
Challenges such as parasitic injections, shock injections, and non-ideal driver beam dynamics will be discussed. Recent technical advances in PIConGPU that enabled the execution of these large-scale simulation campaigns are briefly covered, as well as new synthetic in situ shadowgraph and radiation diagnostics.

Keywords: LPWFA; hybrid; LWFA; PWFA; PIConGPU

Involved research facilities

  • Draco
  • Poster
    EuroNNAc Special Topics Workshop, 18.-24.09.2022, La Biodola Bay, Isola d'Elba, Italien

Permalink: https://www.hzdr.de/publications/Publ-36096


Simulating hybrid laser-plasma wakefield accelerators using PIConGPU - A look beyond the publication-ready plots

Pausch, R.; Bussmann, M.; Steiniger, K.; Widera, R.; Schöbel, S.; Chang, Y.-Y.; Ghaith, A.; Couperus Cabadağ, J.; Heinemann, T.; Ding, H.; Döpp, A.; Gilljohann, M. F.; Kononenko, O.; Raj, G.; Corde, S.; Hidding, B.; Karsch, S.; Martinez De La Ossa, A.; Irman, A.; Schramm, U.; Debus, A.

A review of the simulation work behind the recent LPWFA publications.

Keywords: LPWFA; LWFA; PWFA; PIConGPU; hybrid

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  • Draco
  • Lecture (others)
    Hybrid Meeting, 30.06.-01.07.2022, Dresden, Deutschland

Permalink: https://www.hzdr.de/publications/Publ-36095


Transmission electron microscopy for the characterization of nanoscale materials

Hübner, R.

Understanding the physical and chemical properties of various materials demands detailed knowledge about their shape, structure, and composition. Particularly for nanoscale materials, characterization methods with high spatial and analytical resolution are required. Due to the small wavelength of strongly accelerated electrons, transmission electron microscopy (TEM) is one of the most appropriate nanoscale analysis techniques. Moreover, due to the tremendous range of signals arising from electron-solid interaction, a broad range of analysis modes are nowadays available in a transmission electron microscope.
After introducing the advantages of TEM, the basic setup of a transmission electron microscope, and the equipment available at HZDR for performing TEM analyses, the most important modes of imaging are presented, including bright-field, dark-field, and high-resolution imaging in TEM and scanning TEM (STEM) mode. It is shown, how diffraction analysis is used to derive structure and orientation information, while energy-dispersive X-ray spectroscopy (EDXS) and electron energy-loss spectroscopy (EELS) are applied for chemical composition analysis. Using examples from various research and application fields, including e.g. information technology, resource ecology, and radiopharmacy, the various TEM analysis modes are illustrated, and their combination is shown to be essential for a comprehensive understanding of nanoscale materials.

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  • Invited lecture (Conferences)
    Spezialseminar des Instituts für Werkstoffwissenschaft der TU Bergakademie Freiberg, 20.06.2022, Freiberg, Deutschland

Permalink: https://www.hzdr.de/publications/Publ-36094


Tripling energy storage density through order–disorder transition induced polar nanoregions in PbZrO3 thin films by ion implantation

Luo, Y.; Wang, C.; Chen, C.; Gao, Y.; Sun, F.; Li, C.; Yin, X.; Luo, C.; Kentsch, U.; Cai, X.; Bai, M.; Fan, Z.; Qin, M.; Zeng, M.; Dai, J.; Zhou, G.; Lu, X.; Lou, X.; Zhou, S.; Gao, X.; Chen, D.; Liu, J.-M.

Dielectric capacitors are widely used in pulsed power electronic devices due to their ultrahigh power densities and extremely fast charge/discharge speed. To achieve enhanced energy storage density, maximum polarization (Pmax) and breakdown strength (Eb) need to be improved simultaneously. However, these two key parameters are inversely correlated. In this study, order–disorder transition induced polar nanoregions have been achieved in PbZrO3 thin films by making use of the low-energy ion implantation, enabling us to overcome the trade-off between high polarizability and breakdown strength, which leads to the tripling of the energy storage density from 20.5 to 62.3 J/cm3 as well as the great enhancement of breakdown strength. This approach could be extended to other dielectric oxides to improve the energy storage performance, providing a new pathway for tailoring the oxide functionalities.

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Permalink: https://www.hzdr.de/publications/Publ-36093


Modeling and understanding laser-plasma experiments through high-fidelity 3D simulations

Pausch, R.; Bastrakov, S.; Carstens, F.-O.; Günzl, J.; Lebedev, A.; Steiniger, K.; Widera, R.; Voß, M. S.; Bussmann, M.; Schramm, U.; Debus, A.

A overview over all large-scale simulation efforts of the laser electron acceleration team covering both recent simulations and new technical developments.

Keywords: PIConGPU; LWFA; PWFA; shadowgraphy; alpaka; openPMD

Involved research facilities

  • Draco
  • Lecture (others)
    WHELMI meeting 2022, 06.-08.06.2022, Rechovot, Israel

Permalink: https://www.hzdr.de/publications/Publ-36092


Simulating hybrid laser-plasma wakefield accelerators using PIConGPU

Pausch, R.; Couperus, J. P.; Schöbel, S.; Bastrakov, S.; Chang, Y.-Y.; Corde, S.; Ding, H.; Döpp, A.; Foester, F. M.; Gilljohann, M.; Haberstroh, F.; Heinemann, T.; Hidding, B.; Karsch, S.; Koehler, A.; Kononenko, O.; Knetsch, A.; Kurz, T.; Martines De Las Ossa, A.; Nutter, A.; Raj, G.; Steiniger, K.; Schramm, U.; Ufer, P.; Widera, R.; Irmann, A.; Bussmann, M.; Debus, A.

An LPWFA accelerator uses electrons from a laser wakefield accelerator stage to drive a second plasma wakefield accelerator stage. This approach makes it possible to downscale PWFAs from kilometer-sized facilities to tabletop experiments and makes the improved beam quality of PWFAs available to LWFA laboratories. The experimental realization of the hybrid accelerator at HZDR was accompanied by a simulation campaign with the fully GPU accelerated, 3D3V particle-in-cell PIConGPU. Running simulations on modern GPUs allowed reducing simulation time while modeling different experimental settings in a fully three-dimensional setup. The latter enabled studying the influence of tilted shock fronts and few-cycle probes, among others. In this talk, we will not only introduce the general concept but also discuss some of the recent results obtained using particle-in-cell simulations. Moreover, the technical innovations in PIConGPU that have enabled these new types of simulations will also be briefly addressed.

Keywords: LWFA; PWFA; hybrid; PIConGPU; accelerator

Involved research facilities

  • Draco
  • Lecture (Conference) (Online presentation)
    DPG Frühjahreskonferenz, 28.03.-01.04.2022, Mainz / virtuell, Deutschland

Permalink: https://www.hzdr.de/publications/Publ-36091


A substitutional synthesis mechanism for attaining InGaN/GaN quantum wells with sub-nm thickness and high indium content

Vasileiadis, I. G.; Lymperakis, L.; Adikimenakis, A.; Gkotinakos, A.; Devulapalli, V.; Liebscher, C. H.; Androulidaki, M.; Hübner, R.; Karakostas, T.; Georgakilas, A.; Komninou, P.; Dimakis, E.; Dimitrakopulos, G. P.

Ultra-thin InxGa1-xN/GaN quantum wells (QWs) embedded in short period superlattices (SPSs) are promising for bandgap engineering and for exploring topological insulator behavior. In order to achieve such feats, it is required to reach high In contents at thicknesses of few atomic monolayers, while avoiding plastic relaxation despite the large misfit. Previous theoretical and experimental works supported the existence of a compositional limit around 33% In in such QWs. In this work, an alternative growth model is proposed, overcoming this limit. Multi-QW (MQW) heterostructures were grown by plasma-assisted molecular beam epitaxy (PAMBE) under metal-rich conditions varying the growth temperatures of the QWs and GaN spacers. The structural quality, strain state, and composition of the QWs were investigated using aberration-corrected scanning transmission electron microscopy (HRSTEM) [1]. Experimental observations were combined with atomistic calculations across the whole compositional range, using an empirical interatomic potential as well as density functional theory. Multislice image simulations of the atomistic supercells were compared quantitatively to the HRSTEM observations using peak finding, thus resulting in the QW composition and strain with monolayer spatial resolution. The growth of monolayer-thick QWs with In-content near 50% was demonstrated and confirmed by photoluminescence measurements. The observed dependence of the QW composition on the growth temperature, and the self-limited QW thickness under metal-rich growth conditions, suggest the existence of a substitutional synthesis mechanism, comprising the surface exchange between In and Ga atoms. The proposed mechanism is promising for further increasing the composition towards binary InN/GaN QWs.

[1] I. G. Vasileiadis, L. Lymperakis, A. Adikimenakis, A. Gkotinakos, V. Devulapalli, C. H. Liebscher, M. Androulidaki, R. Hübner, Th. Karakostas, A. Georgakilas, Ph. Komninou, E. Dimakis and G. P. Dimitrakopulos, Sci. Rep., 11, 20606 (2021)

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  • Lecture (Conference)
    International Workshop on Nitride Semiconductors, 09.10.2022, Berlin, Germany

Permalink: https://www.hzdr.de/publications/Publ-36090


Strained GaAs nanowires with high electron mobility on Si substrates

Balaghi, L.; Shan, S.; Fotev, I.; Moebus, F.; Rana, R.; Venanzi, T.; Hübner, R.; Mikolajick, T.; Schneider, H.; Helm, M.; Pashkin, O.; Dimakis, E.

Novel transistor concepts based on semiconductor nanowires promise high performance, lower energy consumption and better integrability in various platforms in nanoscale dimensions. Concerning the intrinsic transport properties of electrons in nanowires, relatively high mobility values that approach those in bulk crystals have been obtained only in core/shell heterostructures, where electrons are confined inside the core and, thus, their scattering on the nanowire surface is suppressed.
Here, we demonstrate that the large strain in core/shell nanowires with significant lattice-mismatch between the core and the shell can affect the effective mass and the scattering of electrons in a way that boosts their mobility to higher levels compared to results obtained by any other means. Specifically, we use GaAs/InAlAs core/shell nanowires with a lattice mismatch in the range of 3%, grown on Si substrates by molecular beam epitaxy. Overgrown with an 80-nm-thick shell, the 22-nm-thick core is hydrostatically tensile-strained as found by both Raman scattering and photoluminescence measurements [1, 2]. The transport properties and dynamics of electrons were probed at room temperature by optical-pump THz-probe spectroscopy, which is an established contactless method that circumvents challenges in the fabrication of electrical contacts on nanowires. We found that the mobility of electrons inside the strained GaAs core undergoes a remarkable enhancement despite the small core thickness, becoming 30 – 50 % higher than in unstrained GaAs/AlGaAs nanowires or bulk GaAs [2]. Our studies are extended to modulation-doped GaAs/InAlAs nanowires and the results will be presented.
The reported strain-induced mobility enhancement is of major importance for the realization of transistors with high speed and low power consumption, having the potential to trigger major advancements in high-performance nanowire electronic devices monolithically integrated in Si platforms.

[1] L. Balaghi, G. Bussone, R. Grifone, R. Hübner, J. Grenzer, M. Ghorbani-Asl, A. V. Krasheninnikov, H. Schneider, M. Helm, E. Dimakis, Nat Commun 10, 2793 (2019).
[2] L. Balaghi, S. Shan, I. Fotev, F. Moebus, R. Rana, T. Venanzi, R. Hübner, T. Mikolajick, H. Schneider, M. Helm, A. Pashkin, E. Dimakis, Nat Commun 12, 6642 (2021).

Involved research facilities

Related publications

  • Lecture (Conference)
    19th Conference on Gettering and Defect Engineering in Semiconductor Technology, 10.09.2022, Mondsee, Austria

Permalink: https://www.hzdr.de/publications/Publ-36089


Overview on in vitro experiment possibilities and Flash experiments

Beyreuther, E.

Overview on in vitro experiment possibilities and Flash experiments

Involved research facilities

  • OncoRay
  • Lecture (Conference) (Online presentation)
    NIRO - DD Seminar on Pre-clinical Research in Proton Therapy, 07.03.2022, Zoom, Deutschand & Norwegen

Permalink: https://www.hzdr.de/publications/Publ-36088


Preclinical studies on proton Flash-RT

Beyreuther, E.

Overview over preclinical proton flash experiments

Involved research facilities

  • OncoRay
  • Draco
  • Invited lecture (Conferences)
    Bergen Proton Research Seminar, 21.11.2022, Bergen, Norway

Permalink: https://www.hzdr.de/publications/Publ-36087


Effects of beam pulse structure on oxygen depletion and radical production at ultra-hig dose rates and implications for the flash effect in zebrafish embryo

Jansen, J.; Beyreuther, E.; García-Calderón, D.; Karsch, L.; Knoll, J.; Pawelke, J.; Schürer, M.; Seco, J.

Background and Aims

A prominent explanation of the FLASH effect is the oxygen depletion hypothesis, in which the radiolysis of water or cytoplasm produces radicals that react with the O2 dissolved in the water or cytoplasm. This would result in an oxygen depletion leading to a hypoxic target and hence radiation protection effect based on the Oxygen Enhancement Ratio. The presented study aims to investigate the impact of beam pulse structure on oxygen depletion and its correlation with biological endpoints.
Methods

O2 depletion was measured using 30 MeV electron irradiation on a sealed water target. Read-out was performed using TROXSP5 sensors. The beam pulse structure was altered to assess 4 different regimes of average and beam pulse dose rate.
At clinical doses, not enough O2 was consumed to explain a FLASH effect due to radiation-induced hypoxia. The amount of O2 depleted per dose depends on the dose rate, and slightly less O2 is removed at higher dose rates, suggesting radical-radical reactions as a possible mechanism of the FLASH effect. Furthermore, our results regarding the pulse structures showed that the average dose rate seems to dominate the pulse dose rate in terms of radical production and O2 depletion. The direct comparison of the depletion measurements presented here with biological experiments on zebrafish embryos from another study also showed that there was a strong correlation between O2 depletion and biological radiation response (FIG 1). The results emphasize that the FLASH effect in biological tissues is likely to be explained by decreased effective radical production at high dose rates.
Conclusions

In the tested beam parameters, the mean dose rate has the most pronounced effect on O2 depletion. Depletion measurements showed a clear correlation with biological data, from which FLASH effects can be largely explained by changes in radical production.

Involved research facilities

  • Direct Electron Beam in Air
  • Poster
    2nd Flash Radiotherapy and Particle Therapy Conference (FRPT 2022), 30.11.-02.12.2022, Barcelona, Spain

Permalink: https://www.hzdr.de/publications/Publ-36086


Systematic proton Flash experiments with zebrafish embryo

Beyreuther, E.; Brack, F.-E.; Hans, S.; Horst, F. E.; Jansen, J.; Karsch, L.; Leßmann, E.; Löck, S.; Metzkes-Ng, J.; Pawelke, J.; Reimold, M.; Seco, J.; Schramm, U.; Szabo, R.; Zeil, K.

Background and Aims
The Flash effect, i.e. the radiobiological observation of normal tissue sparing but efficient tumor killing by
ultra-high dose rate (UHDR) irradiation, promise great benefits for cancer patient treatment. The translation
process of the Flash effect should be accompanied by systematic studies on the necessary beam parameters
for each clinical applied radiation. Using the zebrafish embryo model, the influence of partial oxygen level
(https://doi.org/10.1016/j.radonc.2021.02.003), electron pulse structure and dose were studied thoroughly.
To investigate a similar range of proton beam parameters UHDR experiments at different accelerators, but
under comparable conditions, are required.
Methods
To cover a broad range of proton dose rates, experiments have been prepared at the University Proton
Therapy Dresden (UPTD) and at the Draco laser accelerator (Helmholtz-Zentrum Dresden-Rossendorf)
providing quasi-continuous and single-shot proton beam delivery in the range of 0.12 to 10^9 Gy/s. To fulfil
the requirements of the model, i.e., irradiating a sufficiently high number of embryos at low oxygen level,
dedicated setups were established that also allow for the online measurement of oxygen partial pressure
and cope with the geometric restrictions of the respective accelerator.
Results
A comparison experiment at UPTD reveal a significant protecting Flash effect in both setups for zebrafish
embryo treated with 300 Gy/s relative to conventional proton dose rate. Moreover, a higher protection of
the embryos was indicated comparing the embryo length after irradiation with 10^9 Gy/s and conventional
proton dose rate, respectively.
Conclusions
Experimental setups have been established that allow for systematic proton dose rate studies using the
zebrafish embryo model at the clinical cyclotron of UPTD and at the Draco laser accelerator. Therewith, the
experimental possibilities at the Dresden platform for UHDR radiobiology are extended providing electron
and proton dose rates up to 10^9 Gy/s.

Involved research facilities

  • OncoRay
  • Draco
  • Poster
    2nd Flash Radiotherapy and Particle Therapy Conference (FRPT 2022), 30.11.-02.12.2022, Barcelona, Spain

Permalink: https://www.hzdr.de/publications/Publ-36085


Unique Proton and Electron Flash Experiment Platform for Preclinical Studies

Beyreuther, E.

The recent rediscovery of the “Flash Effect” revived the interest in high and ultra-high dose-rate radiation
effects throughout the radiobiology community, promising protection of normal tissue, while simultaneously
not altering tumour control. Systematic preclinical studies at (modified) clinical accelerators resulted in a recipe
of necessary beam parameters for the induction of electron Flash effect (doi:10.3389/fonc.2019.01563), whereas
for protons the optimal parameter setting is still under investigation. Expanding the clinical parameter range
the “Dresden platform for high-dose rate radiobiology” enables electron and proton experiments with doserates
of up to 109 Gy/s and more flexible beam pulse structures.
For systematic studies of the available electron and proton beam parameters, the zebrafish embryo model was
irradiated under similar conditions at the different accelerators. The irradiation setup was adapted with respect
to model requirements, i.e. a certain partial oxygen pressure, and the respective beam parameters.
Making use of the flexible pulse structure of the research electron accelerator ELBE, the mean dose rate was
identified as the factor that defines the electron Flash effect with decreasing radiation damage for electron
mean dose rate from 0.1 to 10^5 Gy/s. To cover a similar range of dose rates for protons, irradiations at the
University Proton Therapy Dresden (UPTD) were combined with proton treatment at the laser proton
accelerator DRACO. In doing so, the effects of proton dose rates in the range of 0.1 to 10^9 Gy/s could be
investigated.
To sum up, using the zebrafish embryo model as showcase the possibilities of the “Dresden platform” were
demonstrated, which opens the possibility for systematic studies on the mechanisms of the Flash effect in
tissue, on physico-chemical or molecular level.

Involved research facilities

  • OncoRay
  • Direct Electron Beam in Air
  • Draco
  • Invited lecture (Conferences)
    2nd Flash Radiotherapy and Particle Therapy Conference (FRPT 2022), 30.11.-02.12.2022, Barcelona, Spain

Permalink: https://www.hzdr.de/publications/Publ-36084


The Need for a Research Room in a Proton Therapy Centre – Dresden perspective

Beyreuther, E.

The Need for a Research Room in a Proton Therapy Centre – Dresden perspective

Involved research facilities

  • OncoRay
  • Invited lecture (Conferences)
    Proton Therapy Knowledge Hub, 29.11.2022, Barcelona, Spain

Permalink: https://www.hzdr.de/publications/Publ-36083


Beam pulse structure affects the magnitude of Flash effect in zebrafish embryo

Beyreuther, E.; Pawelke, J.; Brand, M.; Hans, S.; Hideghety, K.; Jansen, J.; Karsch, L.; Leßmann, E.; Löck, S.; Schürer, M.; Seco, J.; Szabo, E. R.; Schramm, U.

Purpose/Objective
In a previous experiment at the HZDR research electron accelerator ELBE high mean dose rates of 105 Gy/s in combination with partial oxygen pressure below 5 mmHg protect zebrafish embryo from radiation damage compared to continuous reference irradiation (mean dose rate of 0.11 Gy/s) and higher oxygen pressure (Pawelke et al. Radiother Oncol 2021). However, the influence of beam pulse structure on the radiation response remains unanswered and should be resolved in an upcoming experiment.
Material/Methods
In addition to the Flash and the reference regime, the ELBE accelerator was used to mimic the pulse structure of a clinical electron linac delivering a dose of 28 Gy by 5 pulses at a frequency of 250 Hz. For comparison, a fourth regime of similar mean dose rate, but continuous beam (280 Gy/s) mimicking FLASH irradiation at a isochronous proton cyclotron (Beyreuther et al. Radiother Oncol 2019) was applied. Wild type zebrafish embryo (24 hpf) were irradiated and the radiation induced malformation were studied during the four day follow up for all four regimes. Zebrafish embryo irradiation was performed under low oxygen pressure and the depletion of depletion during irradiation was measured online.
Results
Compared to the reference regime a protecting Flash effect was found the three other pulse regimes for endpoints, except embryo survival. Analysing the radiation induced malformation more detailed significant correlations to mean and pulse dose rate are revealed. Surprisingly, the beam delivery in macro pulses (Linac regime) reduces the Flash effect relative to delivery at the same pulse dose rate but in a single pulse.
Conclusion.
The ELBE electron accelerator can be applied to study the influence of beam dose rate and pulse structure on the Flash effect by varying both parameters over several orders of magnitude. Hence, ELBE is an ideal tool for systematic studies on optimal electron beam parameters for Flash, including pulse structures that are relevant for clinical application.

Involved research facilities

  • OncoRay
  • Direct Electron Beam in Air
  • Lecture (Conference)
    ESTRO 2022, 06.-10.05.2022, Copenhagen, Denmark
  • Abstract in refereed journal
    Radiotherapy and Oncology 170(2022), S69-S70

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  • Secondary publication expected

Permalink: https://www.hzdr.de/publications/Publ-36082


Ultra-high dose rate radiobiology at the "Dresden platform for high dose-rate radiobiology"

Beyreuther, E.

Ultra-high dose rate radiobiology at the "Dresden platform for high dose-rate radiobiology"

Involved research facilities

  • OncoRay
  • Direct Electron Beam in Air
  • Draco
  • Lecture (others)
    HZDR ELI Beamlines Workshop, 31.05.2022, Prague, Czech

Permalink: https://www.hzdr.de/publications/Publ-36081


Aus Sicht der Akademie: Translational Radiopharmaceutical Research Beyond Vision

Kopka, K.

kein Abstrakt verfügbar

  • Invited lecture (Conferences)
    NuklearMedizin 2022 - Vorkongress-Symposium „Beyond Vision – quo vadis", 27.-30.04.2022, Leipzig, Deutschland

Permalink: https://www.hzdr.de/publications/Publ-36080


Ecological dynamics with long-range individual interactions: from stochastic individual based models to nonlocal partial differential equations

Martinez Garcia, R.

A lot of ecological theory relies on ordinary differential-equation models that assume well-mixed systems and do not incorporate any information about the spatial distribution of organisms. However, ecosystems present spatial heterogeneities at different scales that can impact individual fitness and, ultimately, population dynamics. I will present an alternative approach to describe the spatiotemporal dynamics of a population of interacting agents. To this end, I will consider a system with nonlinear birth-death rates and positive and negative inter-individual interactions acting at different spatial ranges. I will first describe the stochastic, individual-level rules that govern the reproduction and death of each individual. Then, using field-theory techniques, I will derive a non-local partial differential equation for the population density and compare its predictions with those obtained assuming well-mixed populations. Finally, I will discuss the ecological relevance of our results and how this approach can be extended to more complex scenarios.

  • Lecture (others)
    Seminar Series of the Mathematics Department, 12.12.2022, Dundee, United Kingdom

Permalink: https://www.hzdr.de/publications/Publ-36079


Gezielte Bekämpfung von Prostatakrebs

Kopka, K.

kein Abstrakt verfügbar

  • Invited lecture (Conferences)
    8. Jahrestreffen der Seniorexperten Chemie (GDCh), 02.-04.05.2022, Wernigerode, Deutschland

Permalink: https://www.hzdr.de/publications/Publ-36078


Exotic Cores with and without Dark-Matter Admixtures in Compact Stars

Zöllner, R.; Kämpfer, B.

We parameterize the core of compact spherical star configurations
by a mass ($m_x$) and a radius ($r_x$)
and study the resulting admissible areas in the total-mass -- total-radius plane.
The employed fiducial equation-of-state models of the corona at radii $r \ge r_x$ and
pressures $p \le p_x = p(r = r_x)$ are that (i) of constant sound velocity and (ii)
a proxy of DY$\Delta$ DD-ME2 provided by Buchdahl's exactly solvable ansatz.
The core ($r < r_x$) may contain any type of material,
e.g.\ Standard-Model matter with unspecified equation of state or/and
an unspecified Dark-Matter admixture.
Employing a toy model for the cool equation of state with first-order phase transition
we discuss also the mass-radius relation of compact stars with an admixture of Dark Matter
in a Mirror-World scenario.

Keywords: compact stars; core-corona decomposition; Dark-Matter admixture

Permalink: https://www.hzdr.de/publications/Publ-36077


Can we offer the right basic radiopharmaceutical research tool box for next generation clinical theranostics?

Kopka, K.

kein Abstrakt verfügbar

  • Invited lecture (Conferences)
    6th Theranostics World Congress, 24.-26.06.2022, Wiesbaden, D

Permalink: https://www.hzdr.de/publications/Publ-36076


Can we consolidate Radionuclide Theranostics through Applied Radiopharmaceutical Sciences?

Kopka, K.

kein Abstrakt verfügbar

  • Invited lecture (Conferences) (Online presentation)
    61st Annual Meeting of the Korean Society of Nuclear Medicine, 04.-05.11.2022, Ilsan, Korea

Permalink: https://www.hzdr.de/publications/Publ-36075


Sensitization of Patient-Derived Colorectal Cancer Organoids to Photon and Proton Radiation by Targeting DNA Damage Response Mechanisms

Pape, K.; Lößner, A.; William, D.; Czempiel, T.; Beyreuther, E.; Klimova, A.; Lehmann, C.; Schmäche, T.; Merker, S. R.; Naumann, M.; Ada, A.; Baenke, F.; Seidlitz, T.; Bütof, R.; Dietrich, A.; Krause, M.; Weitz, J.; Klink, B.; von Neubeck, C.; Stange, D. E.

Pathological complete response (pCR) has been correlated with overall survival in several
cancer entities including colorectal cancer. Novel total neoadjuvant treatment (TNT) in rectal cancer
has achieved pathological complete response in one‐third of the patients. To define better treatment
options for nonresponding patients, we used patient‐derived organoids (PDOs) as avatars of the
patient´s tumor to apply both photon‐ and proton‐based irradiation as well as single and combined
chemo(radio)therapeutic treatments. While response to photon and proton therapy was similar,
PDOs revealed heterogeneous responses to irradiation and different chemotherapeutic drugs.
Radiotherapeutic response of the PDOs was significantly correlated with their ability to repair
irradiation‐induced DNA damage. The classical combination of 5‐FU and irradiation could not
sensitize radioresistant tumor cells. Ataxia‐telangiectasia mutated (ATM) kinase was activated
upon radiation, and by inhibition of this central sensor of DNA damage, radioresistant PDOs were
resensitized. The study underlined the capability of PDOs to define nonresponders to irradiation
and could delineate therapeutic approaches for radioresistant patients.

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  • OncoRay

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Permalink: https://www.hzdr.de/publications/Publ-36074


A Quantitative Assessment of Rubrics Using a Soft Computing Approach

Bhattacharyya, S.; De, S.; Mrsic, L.; Pan, I.; Muhammad, K.; Konar, D.

This study aims to elucidate a soft computing approach for quantitative assessment of the 1
scoring grade or rubrics for students in an outcome based education system. The intended approach 2
resorts to a fuzzy membership based assessment of the different parameters of the scoring system, 3
thereby yielding a novel and humanly assessment technique. The selection of the membership 4
functions is based on the human behavior so as to make a realistic representation of the scoring 5
strategy. The novelty of the proposed strategy lies in assigning fuzzy membership based weighted 6
scores instead of simply assigning score bands to rubric categories, as is performed in normal rubrics 7
based assessment. Comparative results demonstrated on a case study of Indian education scenario 8
reveal the effectiveness of the proposed strategy over other fuzzy membership and normal rubrics 9
based assessment procedures.

Keywords: OBTE; graduate attributes; rubrics; fuzzy sets

Permalink: https://www.hzdr.de/publications/Publ-36073


Performance Portability with alpaka

Stephan, J.; Bussmann, M.

The alpaka library is a header-only C++17 abstraction library for development across hardware accelerators (CPUs, GPUs, FPGAs). Its aim is to provide performance portability across accelerators through the abstraction (not hiding!) of the underlying levels of parallelism. In this poster we will show the concepts behind alpaka, how it is mapped to the various underlying hardware models, and show the features introduced over the last year. In addition, we will also present the software ecosystem surrounding alpaka.

Keywords: alpaka; C++; GPGPU; FPGA; performance portability; HPC

  • Open Access Logo Poster
    8. Annual MT Meeting, 26.-27.09.2022, Hamburg, Deutschland

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Permalink: https://www.hzdr.de/publications/Publ-36072


Performance Portability with alpaka

Stephan, J.; Bastrakov, S.; Di Pilato, A.; Ehrig, S.; Gruber, B. M.; Vyskocil, J.; Widera, R.; Bussmann, M.

The alpaka library is a header-only C++17 abstraction library for development across hardware accelerators (CPUs, GPUs, FPGAs). Its aim is to provide performance portability across accelerators through the abstraction (not hiding!) of the underlying levels of parallelism. In this talk we will show the concepts behind alpaka, how it is mapped to the various underlying hardware models, and show the features introduced over the last year. In addition, we will also (shortly) present the software ecosystem surrounding alpaka.

Keywords: alpaka; performance portability; GPGPU; C++; heterogeneous programming; software portability; parallel programming; CUDA; OpenMP; SYCL

  • Open Access Logo Poster
    21st International Workshop on Advanced Computing and Analysis Techniques in Physics Research (ACAT 2022), 23.-28.10.2022, Bari, Italia

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Permalink: https://www.hzdr.de/publications/Publ-36071


Mathematical Foundation for Quantum Computing

Konar, D.

This session was part of ISTE, IET and University of Mumbai approved one week Faculty Development Program on "Quantum Computing" which was conducted in hybrid mode from 12'h Dec 2022 to 17'h Dec 2022.

  • Lecture (others) (Online presentation)
    ISTE' IET and University of Mumbai approved one week Faculty Development Program (FDP) on "Quantum Computing", 12.-17.12.2022, Mumbai, India
  • Invited lecture (Conferences) (Online presentation)
    Faculty Development Program (FDP) on "Quantum Computing", 12.-17.12.2022, Mumbai, India

Permalink: https://www.hzdr.de/publications/Publ-36070


Polynomial differentiation decreases the training time complexity of physics-informed neural networks and strengthens their approximation power

Suarez Cardona, J. E.; Hecht, M.

We present a novel class of approximations for variational losses, being applicable for the training of physics-informed neural nets (PINNs). The formulations reflect classic Sobolev space theory for partial differential equations and their weak formulations.
The loss computation rests on an extension of \emph{Gauss-Legendre cubatures}, we term \emph{Sobolev cubatures}, replacing \emph{automatic differentiation (A.D.)}. We prove the runtime complexity for training the resulting Sobolev-PINNs (SC-PINNs) to be less than required by PINNs relying on A.D. On top of one-to-two order of magnitude speed-up the SC-PINNs are demonstrated to achieve closer solution approximations for prominent forward and inverse (non-linear) PDE problems compared to established PINNs.

Related publications

  • ARXIV: 2211.15443 is previous version of this (Id 36069) publication

Permalink: https://www.hzdr.de/publications/Publ-36069


Parameterized Quantum Supervised Learning Classifiers

Konar, D.; Cangi, A.

Recent years witnessed various supervised learning frameworks relying on trainable quantum circuits as a result of advancement of quantum machine learning. The variational quantum classifier classifies data using a Variational Quantum Circuit (VQC) with an ansatz. The primary goal of the quantum supervised learning classifiers is to use the quantum feature map to transform data from distinct classes to different places in Hilbert space. However, it is not feasible to do feature selection beforehand, and for high-dimensional data using specific features to embed in the ansatz leads to data loss and error in classification. Hence, often data reduction technique like Shannon map is used on the data before uploading it to the quantum circuit. To obviate the data reduction before feeding to the circuit, dense parameterized quantum circuits with lesser number trainable parameters have been proposed without compromising the classification accuracy. The proposed quantum supervised learning framework is an improvement over established work on supervised quantum classifications. To show the effectiveness of the proposed densed quantum circuit, extensive experiments have been performed on IRIS data set and results show that it outperforms the previous quantum supervised classification frameworks in terms of classifications accuracy and complexity of the frameworks.

Keywords: Quantum computing; Quantum Machine Learning

  • Poster
    LEAPS meets Quantum Technology, 15.-20.05.2022, Elba Island, Italy

Permalink: https://www.hzdr.de/publications/Publ-36066


First application of the Prompt Gamma-Ray Timing method for proton treatment verification on anthropomorphic head phantom under clinical irradiation

Makarevich, K.; Römer, K.; Schellhammer, S.; Turko, J. A. B.; Wagner, A.; Kögler, T.

The Prompt Gamma-Ray (PG) Timing technique (PGT) is a promising candidate for online proton treatment verification as it is small, light-weight, gantry-integrable, and it introduces no additional dose to patients. We report on the first evaluation of the PGT system under clinically relevant conditions.
To this end, the CIRS Proton Therapy Dosimetry Head phantom was irradiated with clinically realistic glioblastoma treatment plans. Time-of-flight distributions of PG were acquired with inorganic scintillators of different sizes (Ø1″×1″, Ø2″×1″, Ø2″×2″). Fast dedicated plug-on spectrometers with throughput rates up to 1×10⁶ s⁻¹ and integrated pile-up rejection were used to enable high-resolution time and energy spectroscopy.
While maximizing the detection efficiency, the 2″-detectors show the expected reduced time resolution and worse gain stability compared to the 1″×1″ crystals. Doubling the acceptance of stabilized voltage dividers from 4 to 8 TeV/s improves the gain stability and significantly reduces the gain drift caused by extreme load changes during pencil beam scanning. With active pile-up rejection, the overall count rate was reduced from 700×10³ s⁻¹ to a maximum of 450×10³ s⁻¹. The limited number of processable PG with less than 100 events per treatment spot per detector was identified as the main factor inhibiting clinical application. These findings imply that further development of the PGT setup is necessary for a successful translation into clinical application. We propose strategies for such a development, including the use of larger crystals, or higher segmentation, small ring collimators, and spot aggregation, and report on the first results acquired by applying these methods.

Keywords: Prompt gamma-ray timing; PGT; proton range verification; particle range verification; proton therapy; range verification

Involved research facilities

  • OncoRay
  • Lecture (Conference)
    PTCOG 61, 10.-16.06.2023, Madrid, Spain

Permalink: https://www.hzdr.de/publications/Publ-36065


Global Polynomial Level Sets for Numerical Differential Geometry of Smooth Closed Surfaces

Thekke Veettil, Sachin K.; Zavalani, G.; Hernandez Acosta, U.; Sbalzarini, Ivo F.; Hecht, M.

We present a computational scheme that derives a global polynomial level set parametrisation for smooth closed surfaces from a regular
surface-point set and prove its uniqueness. This enables us to approximate a broad class of smooth surfaces by affine algebraic varieties. From such a
global polynomial level set parametrisation, differential-geometric quantities like mean and Gauss curvature can be efficiently and accurately computed. Even 4th-order terms such as the Laplacian of mean curvature are approximates with high precision. The accuracy performance results in a gain of computational efficiency, significantly reducing the number of surface points required compared to classic alternatives that rely on surface meshes or embedding grids. We mathematically derive and empirically demonstrate the strengths and the limitations of the present approach, suggesting it to be applicable to a large number of computational tasks in numerical differential geometry.

Keywords: Numerical differential geometry; surface approximation; mean curvature; Gauss curvature; level set

Related publications

  • ARXIV: 2212.11536 is previous version of this (Id 36064) publication

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Permalink: https://www.hzdr.de/publications/Publ-36064


Application Experiences on a GPU-Accelerated Arm-based HPC Testbed

Elwasif, W.; Godoy, W.; Hagerty, N.; Harris, J. A.; Hernandez, O.; Joo, B.; Kent, P.; Lebrun-Grandie, D.; Maccarthy, E.; Melesse Vergara, V. G.; Messer, B.; Miller, R.; Oral, S.; Bastrakov, S.; Bussmann, M.; Debus, A.; Steiniger, K.; Stephan, J.; Widera, R.; Bryngelson, S. H.; Le Berre, H.; Radhakrishnan, A.; Young, J.; Chandrasekaran, S.; Ciorba, F.; Simsek, O.; Clark, K.; Spiga, F.; Hammond, J.; Stone, J. E.; Hardy, D.; Keller, S.; Piccinali, J.-G.; Trott, C.

This paper assesses and reports the experience of ten teams working to port,validate, and benchmark several High Performance Computing applications on a novel GPU-accelerated Arm testbed system. The testbed consists of eight NVIDIA Arm HPC Developer Kit systems built by GIGABYTE, each one equipped with a server-class Arm CPU from Ampere Computing and A100 data center GPU from NVIDIA Corp. The systems are connected together using Infiniband high-bandwidth low-latency interconnect. The selected applications and mini-apps are written using several programming languages and use multiple accelerator-based programming models for GPUs such as CUDA, OpenACC, and OpenMP offloading. Working on application porting requires a robust and easy-to-access programming environment, including a variety of compilers and optimized scientific libraries. The goal of this work is to evaluate platform readiness and assess the effort required from developers to deploy well-established scientific workloads on current and future generation Arm-based GPU-accelerated HPC systems. The reported case studies demonstrate that the current level of maturity and diversity of software and tools is already adequate for large-scale production deployments.

Keywords: ARM; HPC; NVIDIA; GPU; CUDA; OpenACC; OpenMP; alpaka; PIConGPU

  • Open Access Logo Contribution to WWW
    Preprint: https://arxiv.org/pdf/2209.09731.pdf
    DOI: 10.48550/arXiv.2209.09731
  • Open Access Logo Contribution to proceedings
    HPC Asia 2023 Workshop: International Conference on High Performance Computing in Asia-Pacific Region Workshops, 27.02.-02.03.2023, Singapore, Republic of Singapore
    The Proceedings of International Conference on High Performance Computing in Asia-Pacific Region Workshops, New York, NY, USA: The Association for Computing Machinery, 978-1-4503-9989-0, 35-49
    DOI: 10.1145/3581576.3581621
    Cited 1 times in Scopus

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Permalink: https://www.hzdr.de/publications/Publ-36063


Coupled processes across a 10-year-old clayrock/concrete interface: results of a combined X-ray CT and PET transport experiment

Bernard, E.; Kulenkampff, J.; Jenni, A.; Mäder, U.

Interfaces between clay and cementitious materials are studied in the context of deep disposal of radioactive waste. Contrasting porewater chemistries lead to transport and chemical reactions that modify the pore network and affect transport. Research efforts were directed towards mineralogical and physical characterisation of interface regions (e.g. Mäder et al. 2017, Swiss J. Geosci. 110, 307) but little evidence exists on direct observations of transport behaviour across complex skins. We aim at providing evidence on how mineralogical-physical changes at such an interface affect transport of water and solutes, and linking mineralogical-physical characterisation.
A core was recovered at the Mont Terri rock laboratory (CI Experiment), containing a physically preserved interface between Opalinus Clay and Portland cement (PC) concrete reacted for 10 years. A long-term transport experiment was set up by injecting a synthetic claystone pore water into the core on the clay side, and forcing advection/diffusion across the interface and out of the cement side.
Before injection, the core was tomographed by X-ray CT; the clay part showed pre-existing bedding-parallel weak jointing and the PC concrete contains aggregates and gas pores. Figure 1 (left) shows the core skeleton during the infiltration, i.e. only the aggregates in the concrete and the dense Opalinus Clay.
A series of X-ray CT scans over time showed the change in porosity, while PET (positron emission tomography) directly images the mobile phase in 3D, and its penetration as a function of time (Kulenkampff et al., 2016, Solid Earth, 7, 1217). The sample was monitored frequently by high resolution X-ray CT during the first 4 months. 124I was used as PET tracer in the infiltrating synthetic claystone pore water, and the chosen dose allowed for continuous PET scanning during two weeks. Figure 1 (right) shows the flow observed by PET superimposed to the skeleton of the core. PET captured some preferential flow across claystone along some remaining joints, a large spreading of the tracer plume at the clay/cement interface, and some preferential flow across the PC.
The mineralogical and chemical changes coupled to the time-resolved 3D X-ray CT and PET scans (imaging both the stationary and the mobile phase) provide detailed information of coupled processes in complex porous media, e. g. how the dissolution of hydroxide cement phases and the precipitation of carbonates are influenced by advection/diffusion and vice versa.
Partial funding from the European Union's (Euratom) Horizon 2020 Programme under grant agreement 662147 – Cebama is acknowleged, and contributions by Nagra and the Mont Terri Consortium (CI Experiment) to Uni Bern.

Keywords: cement-clay interface; X-ray CT; PET; transport

  • Lecture (Conference)
    Clay Conference, 13.-16.06.2022, Nancy, France

Permalink: https://www.hzdr.de/publications/Publ-36062


Exploiting Heterogeneous Architectures: Applications and Lessons Learned

Stephan, J.

In this talk we show the benefits of using performance portability layers such as alpaka in real-world HPC applications. Using PIConGPU and the CMS Patatrack experiment as examples we demonstrate the minimal porting effort achieved by using alpaka when encountering new and previously unknown hardware architectures.

Keywords: PIConGPU; alpaka; cupla; heterogeneous architectures; heterogeneous systems; heterogeneous programming; C++; performance portability; software portability; HPC

  • Open Access Logo Lecture (others)
    Thirteenth INFN International School on: "Architectures, tools and methodologies for developing efficient large scale scientific computing applications" (ESC 2022), 03.-08.10.2022, Bertinoro, Italia

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Permalink: https://www.hzdr.de/publications/Publ-36061


Introduction to Software Portability Among Heterogeneous Architectures

Stephan, J.

In this talk we first introduce the concept of heterogeneous computing systems and then show the difficulties that lie in programming them. We present the different workload patterns that are suitable for different hardware types. In the end propose the alpaka kernel abstraction library as a possible solution to these challenges.

Keywords: heterogeneous systems; heterogeneous programming; software portability; performance portability; alpaka; C++; heterogeneous architectures; parallel programming; SYCL; Kokkos; RAJA; cupla; LLAMA; vikunja

  • Open Access Logo Lecture (others)
    Thirteenth INFN International School on: "Architectures, tools and methodologies for developing efficient large scale scientific computing applications" (ESC 2022), 03.-08.10.2022, Bertinoro, Italia

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Permalink: https://www.hzdr.de/publications/Publ-36060


Data Publication: Ab initio path integral Monte Carlo simulations of hydrogen snapshots at warm dense matter conditions

Böhme, M.; Dornheim, T.; Moldabekov, Z.; Vorberger, J.
Project Manager: Dornheim, Tobias; ResearchGroup: Moldabekov, Zhandos; RelatedPerson: Vorberger, Jan

This is the archived datasets used for the publication in the article: Ab initio path integral Monte Carlo simulations of hydrogen snapshots at warm dense matter conditions. The dataset also contains the data-analysis python scripts.

Keywords: Path-Integral Monte-Carlo; Warm Dense Hydrogen; Many-body physics

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Permalink: https://www.hzdr.de/publications/Publ-36059


The alpaka SYCL back-end

Stephan, J.

In this talk the kernel abstraction library alpaka is briefly introduced. Afterwards the technical details of the alpaka SYCL back-end are presented.

Keywords: alpaka; SYCL; heterogeneous programming; HPC; parallel programming

  • Open Access Logo Lecture (others) (Online presentation)
    Patatrack Students Meeting, 18.10.2022, Genf, Schweiz

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Permalink: https://www.hzdr.de/publications/Publ-36058


QED.jl - Strong-field particle physics code

Hernandez Acosta, U.; Steiniger, K.; Jungnickel, T.; Bussmann, M.

We present a novel approach for an event generator inherently using exact QED descriptions to predict the results of high-energy electron-photon scattering experiments that can be performed at modern X-ray free-electron laser facilities. Our event generator makes use of the fact, that the classical nonlinearity parameter barely approaches unity in high-frequency regimes accessible at these facilities, while this parameter range is outside of the application window of existing QED-PIC codes. This constraint on the parameter range allows for an approximation which is capable of taking the finite bandwidth of the X-ray laser into account in the description of the interaction.
We investigate the application of the new first-principle method to the generation of events in energy-driven electromagnetic cascades, which complements the studies on intensity-driven cascades at optical laser experiments.

  • Poster
    International Conference on Quantum Systems in Extreme Conditions (QSEC2022), 14.-18.11.2022, Bingen am Rhein, Germany

Permalink: https://www.hzdr.de/publications/Publ-36057


First steps in QED cascades - the onset stage

Hernandez Acosta, U.

While the high frequency of modern x-ray free-electron lasers has the benefit of requiring less energy of a seed electron for triggering the development of a QED cascade, the non-linearity parameter obeys a_0 < 1, in contrast to high-intensity optical lasers. Accordingly, we analyse the phenomenon of multi-photon effects in trident pair production in pulsed x-ray laser fields at such values of a_0. The impact of the energy spectrum and its temporal structure and the coherence of the laser field on the emergent particle distribution at the onset of further cascading is discussed. Besides the evolution of mean multiplicities in the course of an energy-powered cascade, we seek characteristic fluctuation patterns.

Keywords: Strong-field QED; Pair production; Electromagnetic cascades; Trident process

  • Invited lecture (Conferences)
    QED Laser Plasmas (qlasp22), 26.-30.09.2022, Dresden, Germany

Permalink: https://www.hzdr.de/publications/Publ-36055


Event generation in Julia

Hernandez Acosta, U.

The accurate modelling of laser-matter interaction is a very challenging task. Especially, the generation of scattering events to mimic statistical particle distributions seen in experiments have demanding requirements on the computational methods and implementations. With this talk, we introduce the complicated structure of strong-field QED and formulate the fundamental building blocks for Monte-Carlo event generation using this theory, where a key feature is the dynamical coupling of the laser field to the scattering processes. This type of coupling can not be addressed with state-of-the-art event generators used to model processes from the standard model of particle physics. Therefore, we introduce a new implementation of e Monte-Carlo event generator, written in the Julia programming language. Furthermore, we introduce some key language features of Julia, which may come in handy for implementations of future event generators in general, where especially the capabilities of distributed computing will be highlighted.

Keywords: Laser-Matter interaction; Event generation; Julia programming language

  • Invited lecture (Conferences) (Online presentation)
    HSF Physics Generator WG meeting, 07.07.2022, virtuell, virtuell

Permalink: https://www.hzdr.de/publications/Publ-36054


Microstructuring YbRh₂Si₂ for resistance and noise measurements down to ultra-low temperatures

Steppke, A.; Hamann, S.; König, M.; Mackenzie, A. P.; Kliemt, K.; Krellner, C.; Kopp, M.; Lonsky, M.; Müller, J.; Levitin, L. V.; Saunders, J.; Brando, M.

The discovery of superconductivity in the quantum critical Kondo-lattice system YbRh₂Si₂ at an
extremely low temperature of 2 mK has inspired efforts to perform high-resolution electrical
resistivity measurements down to this temperature range in highly conductive materials. Here we
show that control over the sample geometry by microstructuring using focused-ion-beam
techniques allows to reach ultra-low temperatures and increase signal-to-noise ratios (SNRs)
tenfold, without adverse effects to sample quality. In five experiments we show four-terminal
sensing resistance and magnetoresistance measurements which exhibit sharp phase transitions at
the Néel temperature, and Shubnikov–de-Haas (SdH) oscillations between 13 T and 18 T where we
identified a new SdH frequency of 0.39 kT. The increased SNR allowed resistance fluctuation
(noise) spectroscopy that would not be possible for bulk crystals, and confirmed intrinsic 1/ f -type
fluctuations. Under controlled strain, two thin microstructured samples exhibited a large increase
of T̀N from 67 mK up to 188 mK while still showing clear signatures of the phase transition and
SdH oscillations. Superconducting quantum interference device-based thermal noise spectroscopy
measurements in a nuclear demagnetization refrigerator down to 0.95 mK, show a sharp
superconducting transition at T̀c = 1.2 mK. These experiments demonstrate microstructuring as a
powerful tool to investigate the resistance and the noise spectrum of highly conductive correlated
metals over wide temperature ranges.

Permalink: https://www.hzdr.de/publications/Publ-36051


Unconventional Spin State Driven Spontaneous Magnetization in a Praseodymium Iron Antimonide

Pabst, F.; Palazzese Di Basilio, S.; Seewald, F.; Yamamoto, S.; Gorbunov, D.; Chattopadhyay, S.; Herrmannsdörfer, T.; Ritter, C.; Finzel, K.; Doert, T.; Klauss, H.-H.; Wosnitza, J.; Ruck, M.

Consolidating a microscopic understanding of magnetic properties is crucial for a rational design of magnetic materials with tailored characteristics. The interplay of 3d and 4f magnetism in rare-earth transition metal antimonides is an ideal platform to search for such complex behavior. Here the synthesis, crystal growth, structure, and complex magnetic properties are reported of the new compound Pr3Fe3Sb7 as studied by magnetization and electrical transport measurements in static and pulsed magnetic fields up to 56 T, powder neutron diffraction, and Mößbauer spectroscopy. On cooling without external magnetic field, Pr3Fe3Sb shows spontaneous magnetization, indicating a symmetry breaking without a compensating domain structure. The Fe substructure exhibits noncollinear ferromagnetic order below the Curie temperature TC ≈ 380 K. Two spin orientations exist, which approximately align along the Fe–Fe bond directions, one parallel to the ab plane and a second one with the moments canting away from the c axis. The Pr substructure orders below 40 K, leading to a spin-reorientation transition (SRT) of the iron substructure. In low fields, the Fe and Pr magnetic moments order antiparallel to each other, which gives rise to a magnetization antiparallel to the external field. At 1.4 K, the magnetization approaches saturation above 40 T. The compound exhibits metallic resistivity along the c axis, with a small anomaly at the SRT.

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  • High Magnetic Field Laboratory (HLD)

Permalink: https://www.hzdr.de/publications/Publ-36050


Interparticle Charge-Transport-Enhanced Electrochemiluminescence of Quantum-Dot Aerogels

Gao, X.; Jiang, G.; Gao, C.; Prudnikau, A.; Hübner, R.; Zhan, J.; Zou, G.; Eychmüller, A.; Cai, B.

Electrochemiluminescence (ECL) represents a widely explored technique to generate light, in which the emission intensity relies critically on the charge-transfer reactions between electrogenerated radicals. Two types of charge-transfer mechanisms have been postulated for ECL generation, but the manipulation and effective probing of these routes remain a fundamental challenge. Here, we demonstrate the design of quantum dot (QD) aerogels as novel ECL luminophores via a versatile water-induced gelation strategy. The strong electronic coupling between adjacent QDs enables efficient charge transport within the aerogel network, leading to the generation of highly efficient ECL based on the selectively improved interparticle chargetransfer route. This mechanism is further verified by designing CdSe-CdTe mixed QD aerogels, where the two mechanistic routes are clearly decoupled for ECL generation. We anticipate our work will advance the fundamental understanding of ECL and prove useful for designing next-generation QD-based devices.

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Permalink: https://www.hzdr.de/publications/Publ-36048


Plastic instabilities in epitaxial NiMnGa Heusler films

Fareed, A.; Kar, S.; Fähler, S.; Maass, R.

Magnetic shape memory alloys are known to undergo stress- and temperature-driven phase changes. Here we study the specific case of a NiMnGa Heusler alloy that has an austenitic phase at room temperature. Upon cooling or the application of mechanical pressure, the austenite can transform into martensite, allowing for large reversible strain cycling and making such alloys to promising actuating materials. In order to shed more light on the mechanical switching behavior and possible dissipative processes, we probe the nano-scale plasticity of 0.5 and 2 µm thick epitaxial NiMnGa films with nanoindentation. A distinct pop-in signature is seen as the first departure from Hertzian elastic contact mechanics at small film thicknesses. This pop-in behavior persists across four orders of loading rates and over a broad temperature regime from 40°C to -30°C, which encompasses the transformation temperature to martensite. The statistics of the incipient plastic events are well described by a Weibull distribution. Atomic force microscopy reveals surface signatures around indents that indicate residual martensite, which is further confirmed with transmission electron microscopy imaging of the structure underneath indents. Instead of the expected modulated martensite (14M, 10M) that forms during a temperature-driven phase change, regions underneath indents contain non-modulated (NM) martensite. NM martensite exhibits a higher spontaneous strain and often forms at lower temperatures and higher strains. Therefore, it is concluded that the pop-in signature during nanoindentation originates from an athermal martensitic transformation, where the confinement effects result in huge and complex deformation inducing a partly irreversible transition to NM martensite.

Keywords: Magnetic Shape Memory Alloys; Nanoindentation

  • Lecture (Conference)
    Nanobrücken 2022: Nanomechanical Testing Conference, 08.-10.06.2022, Prague, Czech Republik

Permalink: https://www.hzdr.de/publications/Publ-36047


What is the speed limit of martensitic transformations?

Fähler, S.; Schwabe, S.; Lünser, K.; Schmidt, D.; Nielsch, K.; Gaal, P.

Structural martensitic transformations enable various applications, which range from high stroke actuation and sensing to energy efficient magnetocaloric refrigeration and thermomagnetic energy harvesting. All these emerging applications benefit from a fast transformation, but up to now the speed limit of martensitic transformations has not been explored. Here, we demonstrate that a martensite to austenite transformation can be completed in under ten nanoseconds. We heat an epitaxial Ni-Mn-Ga film with a laser pulse and use synchrotron diffraction to probe the influence of initial sample temperature and overheating on transformation rate and ratio. We demonstrate that an increase of thermal energy drives this transformation faster. Though the observed speed limit of 2.5 x 1027 (Js)-1 per unit cell leaves plenty of room for a further acceleration of applications, our analysis reveals that the practical limit will be the energy required for switching. Our experiments unveil that martensitic transformations obey similar speed limits as in microelectronics, which are expressed by the Margolus–Levitin theorem.
[1] S. Schwabe, K. Lünser, D. Schmidt, K. Nielsch, P. Gaal and S. Fähler, https://arxiv.org/abs/2202.12581

Keywords: Martensitic Transformations; Shape Memory Alloys

  • Invited lecture (Conferences)
    MSE2022, 27.-30.09.2022, Darmstadt, Deutschland

Permalink: https://www.hzdr.de/publications/Publ-36046


Disentangling nanotwinned microstructures in Ni-Mn-based Heusler alloys from first-principles

Gruner, M. E.; Miroshkina, O. N.; Fähler, S.; Baigutlin, D.; Sokolovskiy, V. V.; Buchelnikov, V. D.

Depending on composition and chemical order, Ni-Mn-based Heusler alloys exhibit interesting functional properties, which render them useful for magnetic shape memory applications or as magnetocaloric materials. This is linked to the presence of hierarchically twinned modulated structures in martensite, which can be interpreted as adaptive, self-organized arrangement of [110]-aligned nanotwins consisting of non-modulated tetragonal building blocks as was shown previously for the paradigmatic case of stoichiometric Ni2MnGa [1]. A band-Jahn-Teller-type reconstruction of the Fermi surface which in particular softens the [110] transversal acoustic phonons leads to a downhill transformation path from cubic austenite to nanotwinned martensite [2]. The twin interfaces are subject to competing repulsive and attractive interactions related to the frustrated antiferromagnetic coupling between neighboring Mn atoms [3].
Based on recent first-principles calculations in the framework of density functional theory, the present contribution explores the signatures of the interdependence of magnetism, chemical order and nanotwinning in Ni-Mn-based Heusler systems beyond Ni-Mn-Ga and their relevance for the functional properties. Particular emphasis will be made on off-stoichiometric compositions suitable for magnetocaloric purposes.

Keywords: Magnetic Shape Memory Alloys; Martensite; Twinning; First Principle Calculations

  • Poster
    MSE 2022, 27.-30.09.2022, Darmstadt, Deutschland

Permalink: https://www.hzdr.de/publications/Publ-36045


In situ stability study of WAlSiN based selective absorber under heating and cooling cycles in vacuum up to 800°C

Lungwitz, F.; Niranjan, K.; Munnik, F.; Hübner, R.; Garcia Valenzuela, A.; Escobar Galindo, R.; Krause, M.; Barshilia, H.

In situ measurements using RBS, ERD, and SE are less explored in characterizing solar absorber materials at high temperatures [1, 2]. In the present work, we report the W/WAlSiN/SiON/SiOO2 based spectrally selective solar absorber coating with excellent optical, compositional and structural properties at high temperatures [3, 4]. We have carried out in situ Rutherford backscattering spectrometry, elastic recoil detection and spectroscopic ellipsometry measurements at three different temperatures at 450°C, 650°C, and 800°C. An optical model describing perfectly the reflectance and ellipsometric data was developed. Further, the microstructural properties of the solar absorber coating are evaluated using cross-sectional transmission electron microscopy before and after annealing. Our data obtained before and after the heating experiments demonstrate excellent compositional, optical and structural stability of the coatings under the applied conditions. Furthermore, in situ ellipsometry showed the conservation of the optical properties of the W/WAlSiN/SiON/SiOO2 based spectrally selective solar absorber up to 800 °C, which is crucial for high-temperature applications.
[1] Ramón Escobar Galindo, Matthias Krause, K. Niranjan and Harish Barshilia, in Sustainable Material Solutions for Solar Energy Technologies (ed. Mariana Fraga, Delaina Amos, Savas Sonmezoglu, Velumani Subramaniam, Elsevier, 2021).
[2] Lungwitz, F. et al. Transparent conductive tantalum doped tin oxide as selectively solar-transmitting coating for high temperature solar thermal applications, Solar Energy Mater. Solar Cells 196, 84-93, doi:10.1016/j.solmat.2019.03.012 (2019).
[3] K. Niranjan, A. Soum-Glaude, A. Carling-Plaza, S. Bysakh, S. John, H.C. Barshilia, Extremely high temperature stable nanometric scale multilayer spectrally selective absorber coating: Emissivity measurements at elevated temperatures and a comprehensive study on ageing mechanism, Solar Energy Mater. Sol. Cells 221 (2021) 110905, doi:10.1016/j.solmat.2020.110905.
[4] K. Niranjan, A.C. Plaza, T. Grifo, M. Bordas, A. Soum-Glaude, H.C. Barshilia, Performance evaluation and durability studies of W/WAlSiN/SiON/SiOO2 based spectrally selective solar absorber coating for high-temperature applications: A comprehensive study on thermal and solar accelerated ageing, Solar Energy 227 (2021) 457–467, doi:10.1016/j.solener.2021.09.026.

Keywords: Concentrated solar power; high-temperature solar-selective coatings; nanolaminates; in situ analysis; ion beam analysis; STEM-EDXS imaging

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  • Poster
    PSE 2022 - 18th International Conference on Plasma Surface Engineering, 12.-15.09.2022, Erfurt, Deutschland

Permalink: https://www.hzdr.de/publications/Publ-36044


WAlSiN-based solar selective coating stability-study under heating and cooling cycles in vacuum up to 800 °C using in situ Rutherford backscattering spectrometry and spectroscopic ellipsometry

Niranjan, K.; Krause, M.; Lungwitz, F.; Munnik, F.; Hübner, R.; Pemmasani, S. P.; Escobar Galindo, R.; Barshilia, H. C.

In situ Rutherford Backscattering Spectrometry (RBS) and Spectroscopic Ellipsometry (SE) were applied to study the compositional and optical stability of a WAlSiN-based solar-selective coating (SSC) at high temperatures in vacuum. The samples were exposed to heating-cooling cycles between quasi room temperature and stepwise-increased high temperatures of 450 °C, 650 °C, and 800 °C, respectively. In situ RBS revealed full compositional stability of the SSC during thermal cycling. In situ SE indicated full conservation of the optical response at 450 °C and 650 °C, and minimal changes at 800 °C. The analysis of the ex situ optical reflectance spectra after the complete thermal cycling gave an unchanged solar absorptance of 0.94 and a slightly higher calculated thermal emittance at 800 °C of 0.16 compared to 0.15 after deposition. Cross-sectional element distribution analysis performed in scanning transmission electron microscopy mode confirmed the conservation of the SSC’s microstructure after the heating – cooling cycles. The study demonstrates compositional, optical, and structural stability of the WAlSiN-based solar-selective coating at temperatures targeted for the next generation of concentrated solar power plants.

Keywords: Concentrated solar power; high-temperature solar-selective coatings; nanolaminates; in situ analysis; ion beam analysis; STEM-EDXS imaging

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Permalink: https://www.hzdr.de/publications/Publ-36043


A convolutional neural network with self-attention for fully automated metabolic tumor volume delineation of head and neck cancer in [18F]FDG PET/CT

Nikulin, P.; Zschaeck, S.; Maus, J.; Cegla, P.; Lombardo, E.; Furth, C.; Kaźmierska, J.; Rogasch, J.; Holzgreve, A.; Albert, N. L.; Ferentinos, K.; Strouthos, I.; Hajiyianni, M.; Marschner, S. N.; Belka, C.; Landry, G.; Cholewinski, W.; Kotzerke, J.; Hofheinz, F.; van den Hoff, J.

Purpose: PET-derived metabolic tumor volume (MTV) and total lesion glycolysis of the primary tumor are known to be prognostic of clinical outcome in head and neck cancer (HNC). Including evaluation of lymph node metastases can further increase the prognostic value of PET but accurate manual delineation and classification of all lesions is time-consuming and prone to inter-observer variability. Our goal, therefore, was development and evaluation of an automated tool for MTV delineation/classification of primary tumor and lymph node metastases in PET/CT investigations of HNC patients.

Methods: Automated lesion delineation was performed with a residual 3D U-Net convolutional neural network (CNN) incorporating a multi-head self-attention block. 698 [18F]FDG PET/CT scans from 3 different sites and 5 public databases were used for network training and testing. An external dataset of 181 [18F]FDG PET/CT scans from 2 additional sites was employed to assess the generalizability of the network. In these data, primary tumor and metastases were interactively delineated and labeled by two experienced physicians. Performance of the trained network models was assessed by 5-fold cross-validation in the main dataset and by pooling results from the 5 developed models in the external dataset. The Dice similarity coefficient (DSC) for individual delineation tasks and the primary tumor/metastasis classification accuracy were used as evaluation metrics. Additionally, a survival analysis using univariate Cox regression was performed comparing achieved group separation for manual and automated delineation, respectively.

Results: In the cross-validation experiment, delineation of all malignant lesions with the trained U-Net models achieves DSC of 0.885, 0.805, and 0.870 for primary tumor, LN metastases, and the union of both, respectively. In external testing, the DSC reaches 0.850, 0.724, and 0.823 for primary tumor, LN metastases, and the union of both, respectively. The voxel classification accuracy was 98.0% and 97.9% in cross-validation and external data, respectively. Univariate Cox analysis in the cross-validation and the external testing reveals that manually and automatically derived total MTVs are both highly prognostic with respect to overall survival, yielding essentially identical hazard ratios (HR) (HRman = 1.9; p < 0.001 vs. HRcnn = 1.8; p < 0.001 in cross-validation and HRman = 1.8; p = 0.011 vs. HRcnn = 1.9; p = 0.004 in external testing).

Conclusion: To the best of our knowledge, this work presents the first CNN model for successful MTV delineation and lesion classification in HNC. In the vast majority of patients, the network performs satisfactory delineation and classification of primary tumor and lymph node metastases and only rarely requires more than minimal manual correction. It is thus able to massively facilitate study data evaluation in large patient groups and also does have clear potential for supervised clinical application.

Keywords: FDG PET; metabolic tumor volume; MTV; head and neck cancer; HNC; convolutional neural network

Involved research facilities

  • PET-Center

Permalink: https://www.hzdr.de/publications/Publ-36042


Comparison between mechanisms and microstructures of α − γ, γ − ϵ and α − ϵ − α phase transitions in iron

Freville, R.; Dewaele, A.; Bruzy, N.; Svitlyk, V.; Garbarino, G.

The α↔ϵ, α→γ and γ→ϵ transformations have been characterised in diamond anvil cells under hydrostatic compression conditions. In situ x-ray diffraction of single or oligo-crystals and ex situ SEM-EBSD measurements have been analyzed with multi-grain techniques. The mechanisms of α ↔ ϵ transitions are martensitic, following Burgers paths whiwh requires a high plastic activity. A memory effect of the reversion exists in the vast majority of the sample: the starting orientation of α-Fe single crystal is recovered. Small grains of α-Fe exhibit a new orientation compatible with Burgers path, possibly associated to twinning in ϵ-Fe. Close to the α − γ − ϵ-Fe triple point (8.7
GPa, 750 K), the α → γ transformation undergoes via diffusion and recrystallization of γ-Fe, and γ → ϵ transformation is martensitic but involves no plasticity. As a result, the microstuctures in ϵ-Fe produced by a direct α → ϵ transformation and by α → γ → ϵ transitions path are very different.

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Permalink: https://www.hzdr.de/publications/Publ-36041


A convolutional neural network for automated delineation and classification of metabolic tumor volume in head and neck cancer

Nikulin, P.; Hofheinz, F.; Maus, J.; Cegła, P.; Furth, C.; Kaźmierska, J.; Rogasch, J.; Hajiyianni, M.; Kotzerke, J.; Zschaeck, S.; van den Hoff, J.

Deep Learning based approaches for automated analysis of tomographic image data are drawing ever increasing attention in Radiology and Nuclear Medicine. With the advent of the new generation of PET scanners with massively enlarged axial field of view (“total body PET”) the importance of integrating such approaches into clinical workflows will further increase. In the present study we report on our application of a convolutional neural network (CNN) for automated survival analysis in head and neck cancer (HNC): PET parameters such as metabolic tumor volume (MTV), total lesion glycolysis, and asphericity of the primary tumor are known to be prognostic of clinical outcome in HNC patients. Additionally including evaluation of lymph node metastases further increases the prognostic value of PET. However, accurate manual delineation and classification of all lesions is time consuming and incompatible with clinical routine. Our goal, therefore, was development and evaluation of an automated tool for MTV delineation/classification of primary tumor and lymph node metastases in HNC in PET.

Automated delineation of the HNC cancer lesions was per- formed with a residual 3D U-Net convolutional neural network (CNN). 698 FDG PET/CT scans from 3 different sites and 4 public databases were used for network training and testing. In these data, primary tumor and metastases were manually delineated (with assistance of semi-automatic tools) and accordingly labeled by an experienced physician. Performance of the trained network models was assessed by 5-fold cross validation using the Dice similarity coefficient for individual delineation tasks.

Additionally, survival analysis using univariate Cox regression was performed. Delineation of all malignant lesions with the trained U-Net model achieves a Dice coefficient of 0.866 when not dis-
criminating between primary tumor and lymph nodes. Treating primary tumor and lymph node metastases as distinct classes yields Dice coefficients of 0.835 and 0.757 for the respective delin-
eations. The univariate Cox analysis reveals that, both, manually as well as automatically derived total MTVs are highly prognostic with similar hazard ratios (HR) with respect to overall survival
(HR=1.8; P<0.001 and HR=1.7; P<0.001, respectively). To the best of our knowledge, our work represents the first CNN model for successful MTV delineation and lesion classification in HNC. The network quickly performs usually satisfactory delineation and classification of primary tumor and lymph node metastases in HNC using FDG-PET data alone with only minimal sporadic manual corrections required. It is able to massively facilitate study data evaluation in large patient groups and also does have clear potential for clinical application.

Involved research facilities

  • PET-Center
  • Poster
    9th Conference on PET/MR and SPECT/MR & Total-Body PET Workshop, 28.05.-01.06.2022, Isola d'Elba, Italia

Permalink: https://www.hzdr.de/publications/Publ-36040


Experimental and Theoretical Analyses of Adiabatic Two-phase Flows in Horizontal Feed Pipes

Döß, A.

The majority of technical separation processes for fluid mixtures utilize the principle of rectification. If a two-phase mixture is fed into the column, possibly undesirable flow morphologies or severe droplet carry-over may occur, which detrimentally affect separation efficiency and equipment integrity. Currently, the two-phase flow behavior in feed pipes is hardly predicable and mostly based on empirical or heuristic methods, which do not properly account for a broad range of possible fluid properties and plant dimensions. As a consequence, costly safety margins are applied. Feed pipes to separation columns are often characterized by horizontal inlet nozzles, small length-to-diameter ratios and complex routing, involving elbows or bends. The pipe lengths are too short to enable the two-phase flow to fully develop, which thus, enters the column with unknown flow morphology. Since developing flows have rarely been studied, today’s engineering practice relies on existing predictive methods for fully developed two-phase flows. Graphical methods can hardly represent gradual transitions between flow regimes. Analytical models provide only simplified flow representations of the two-phase flow that have not yet been qualified for developing pipe flow. In this work, a comprehensive experimental database of horizontal water-air flows in two test sections with nominal pipe diameters of D = 50 mm and D = 200 mm and feed pipe lengths in the range 10 < L/D < 75 was established. This way, the data cover developing pipe flows with entrance lengths typical for two-phase feeds of separation columns and more developed flows that are comparable with the extensively studied reference system water-air. A particular focus was put on the effect of pipe bends on the flow morphology up- and downstream. The flow morphology was captured using imaging wire-mesh sensors. A 4D fuzzy algorithm was applied to objectively identify the flow two-phase morphologies. Based on their fuzzy representation, the flow morphologies were classified and a novel 2D visualization technique is proposed to discuss the flow development along the feed pipes. Undesired flow morphologies (intermittent flow and entrainment) during the operation of two-phase feeds are hardly predictable by conventional design tools. The inception of intermittent flows was analyzed using the experimental data. Consequently, the inception criteria based on the required liquid levels for fully developed intermittent flows were adapted for short entrance lengths. The characteristic dynamics of flow morphologies that are known to cause the onset of entrainment were analyzed. Based on wave frequencies, a predictive criterion for the susceptibility of wavy flows for the onset of entrainment is introduced and applied to straight feed pipes and horizontal 90° bends. Among the dozens available, 66 reduced-order models for the prediction of the void fraction were tested for straight feed pipes and horizontal 90° pipe bends. Thereof, the ones most suitable for variable operating conditions and pipe geometries were identified and adapted. Complementary 3D simulations were performed to verify the applicability of numerical codes (VoF, AIAD) for flows with free interfaces. The flow morphologies were successfully reproduced at macroscopic scale, however, the simulation results rank behind reduced-order models considering their quantitative predicting capabilities.

Keywords: Distillation; Two-phase feed; Flow morphology; Horizontal two-phase flow

Involved research facilities

  • TOPFLOW Facility
  • Doctoral thesis
    TU Dresden, 2022
    PURL: https://nbn-resolving.org/urn:nbn:de:bsz:14-qucosa2-827786

Permalink: https://www.hzdr.de/publications/Publ-36039


Structural stability of transparent conductive oxide tantalum doped tin oxide during high-temperature treatment

Krause, M.; Hoppe, M.; Mendez, A.; Munnik, F.; Rodriguez Garcia, J.; Lungwitz, F.; Gemming, S.; Rafaja, D.; Escobar-Galindo, R.

The transparent conductive tantalum doped tin oxide is a potential candidate for applications in concentrated solar power technology, dye-sensitized solar cells and dynamic random access memories [1], [2], [3]. In all these fields, high-temperature stability in air is mandatory to preserve its functionality. In this work we demonstrate the compositional and structural in-air-stability of SnO2:Ta thin films at 650 °C and 800 °C for 12 hours. While the element composition and optical spectra were unchanged and the X-ray diffractograms revealed the conservation of a single-phase rutile-type crystal structure, some strong Raman lines of SnO2:Ta underwent substantial changes upon tempering. Quantum ab initio calculations of pristine and Ta-doped SnO2 with systematically varied point defects indicated that preferentially Sn vacancies and excess O atoms are responsible for these strong and unexpected Raman signatures. These defects are partially healed during high-temperature exposure, but that does not affect the functionality of SnO2:Ta as transparent conductor under these harsh conditions. This study provides a comprehensive understanding of crystal and defect structure of Ta-doped SnO2 prior to and after high temperature treatment in air for the first time and encourages its application in different fields where high-T stability, transparency and conductivity are required.
[1] F. Lungwitz et al., Transparent conductive tantalum doped tin oxide as selectively solar-transmitting coating for high temperature solar thermal applications, Solar Energy Mater. Solar Cells 199, 84 (2019), doi: 10.1016/j.solmat.2019.03.012
[2] R. Ramarajan, et al. Large-area spray deposited Ta-doped SnO2 thin film electrode for DSSC application, Solar Energy 211, 547-559 (2020), doi:10.1016/j.solener.2020.09.042.
[3] C. J. Cho, et al. Ta-Doped SnO2 as a reduction-resistant oxide electrode for DRAM capacitors, Journal of Materials Chemistry C 5, 9405-9411 (2017), doi:10.1039/c7tc03467a
Financial support by the EU, grant No. 645725, project FRIENDS2, is gratefully acknowledged.

Keywords: high-temperature materials; in-air stability; transparent conductive oxide; Ta-doped tin oxide; Raman signatures; point defects

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  • Lecture (Conference)
    PSE 2022 - 18th International Conference on Plasma Surface Engineering, 12.-15.09.2022, Erfurt, Deutschland

Permalink: https://www.hzdr.de/publications/Publ-36038


A convolutional neural network for automated delineation and classification of metabolic tumor volume in head and neck cancer in FDG-PET/CT

Nikulin, P.; Hofheinz, F.; Maus, J.; Cegła, P.; Furth, C.; Kaźmierska, J.; Rogasch, J.; Kotzerke, J.; Zschaeck, S.; van den Hoff, J.

Aim: Image derived PET parameters such as metabolic tumor volume (MTV), total lesion glycolysis, and tumor asphericity of the primary tumor have been shown to be prognostic of clinical outcome of patients with head and neck cancer (HNC). Evaluation of lymph node metastases in addition to the primary tumor further increases the prognostic value of PET. Such analysis requires, however, accurate delineation and classification of all lesions which is very time-consuming when performed manually. The goal of this study is development of an automated tool for MTV delineation of primary tumor and lymph node metastases in HNC in PET/CT.

Methods: Automated delineation of the HNC cancer lesions was performed with a residual 3D U-Net convolutional neural network (CNN). 698 FDG PET/CT scans from 3 different sites and 4 public databases were used for network training (N=558) and testing (N=140). In these data, primary tumor and metastases were manually delineated and accordingly labeled by an experienced physician. This manual delineation served as the ground truth for network training. Performance of the trained network model was assessed in the test data using the Dice similarity coefficient for primary tumor, metastases, and the union of all lesions, respectively.

Results: The derived U-Net model is capable of accurate delineation of malignant lesions achieving a Dice coefficient of 0.847 for indiscriminative segmentation. Treating primary tumor and lymph node metastases as distinct classes yields Dice coefficients of 0.840 and 0.714 for the respective delineations.

Conclusions: In this work, we present the first CNN model for MTV delineation and classification in HNC. The developed network model allows to quickly perform satisfactory delineation of (and discrimination between) primary tumor and lymph node metastases in HNC with only minimal manual corrections possibly required. It thus is able to improve and to accelerate study data evaluation in quantitative PET and does also have potential for clinical application.

Involved research facilities

  • PET-Center
  • Lecture (Conference)
    NuklearMedizin 2022, 27.-30.04.2022, Leipzig, Deutschland
  • Contribution to proceedings
    NuklearMedizin 2022, 27.-30.04.2022, Leipzig, Deutschland
    A convolutional neural network for automated delineation and classification of metabolic tumor volume in head and neck cancer in FDG-PET/CT: Thieme
    DOI: 10.1055/s-0042-1745945

Permalink: https://www.hzdr.de/publications/Publ-36037


Advantages of Using Triboscopic Imaging: Case Studies on Carbon Coatings in Non-Lubricated Friction Conditions

Lorenz, L.; Makowski, S.; Weihnacht, V.; Krause, M.; Lasagni, A. F.

Triboscopy focuses on the analysis of the temporal evolution of a tribological system, combining local and time-resolved information, most commonly the evolution of friction. In this work, this technique is applied on measurements, which were carried out with a custom-built ultrahigh vacuum tribometer in ball-on-disc configuration. Based on these experiments, an extended classification to distinguish different triboscopic features is suggested, depending on the persistence in both track position and time: UNIFORM, GLOBAL, LOCAL, and SPORADIC. Further, a filter technique for quantifying triboscopic data regarding this classification is introduced. The new and improved triboscopic techniques are applied to various dry friction measurements of hydrogen-free carbon coatings under varying humidity and pressure. The resulting specific triboscopic features are correlated to wear phenomena, such as counter body coating abrasion, inhomogeneities in the wear track, non-uniform track wear, stick-slip and debris in the contact area, demonstrating the increased analysis and monitoring capabilities when compared to conventional friction curves and wear track images.

Keywords: DLC; ta-C; a-C; friction; wear

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Permalink: https://www.hzdr.de/publications/Publ-36035


Low-Friction of ta-C Coatings Paired with Brass and Other Materials under Vacuum and Atmospheric Conditions

Härtwig, F.; Lorenz, L.; Makowski, S.; Krause, M.; Habenicht, C.; Lasagni, A. F.

Vacuum environments provide challenging conditions for tribological systems. MoS2 is one of the materials commonly known to provide low friction for both ambient and vacuum conditions. However, it also exhibits poor wear resistance and low ability to withstand higher contact pressures. In search of wear-resistant alternatives, superhard hydrogen-free tetrahedral amorphous carbon coatings (ta-C) are explored in this study. Although known to have excellent friction and wear properties in ambient atmospheres, their vacuum performance is limited when self-paired and with steel. In this study, the influence of the paired material on the friction behavior of ta-C is studied using counterbodies made from brass, bronze, copper, silicon carbide, and aluminum oxide, as well as from steel and ta-C coatings as reference materials. Brass was found to be the most promising counterbody material and was further tested in direct comparison to steel, as well as in long-term performance experiments. It was shown that the brass/ta-C friction pair exhibits low friction (µ < 0.1) and high wear in the short term, irrespective of ambient pressure, whereas in the long term, the friction coefficient increases due to a change in the wear mechanism. Al2O3 was identified as another promising sliding partner against ta-C, with a higher friction coefficient than that of brass (µ = 0.3), but considerably lower wear. All other pairings exhibited high friction, high wear, or both.

Keywords: diamond-like coatings; wear; tribology; carbon; films

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Permalink: https://www.hzdr.de/publications/Publ-36034


Phase Transformation Induced by High Pressure Torsion in the High-Entropy Alloy CrMnFeCoNi

Chulist, R.; Pukenas, A.; Chekhonin, P.; Hohenwarter, A.; Pippan, R.; Schell, N.; Skrotzki, W.

The forward and reverse phase transformation from face-centered cubic (fcc) to hexagonal
close-packed (hcp) in the equiatomic high-entropy alloy (HEA) CrMnFeCoNi has been investigated
with diffraction of high-energy synchrotron radiation. The forward transformation has been induced
by high pressure torsion at room and liquid nitrogen temperature by applying different hydrostatic
pressures and large shear strains. The volume fraction of hcp phase has been determined by Rietveld
analysis after pressure release and heating-up to room temperature as a function of hydrostatic
pressure. It increases with pressure and decreasing temperature. Depending on temperature, a
certain pressure is necessary to induce the phase transformation. In addition, the onset pressure
depends on hydrostaticity; it is lowered by shear stresses. The reverse transformation evolves over
a long period of time at ambient conditions due to the destabilization of the hcp phase. The effect
of the phase transformation on the microstructure and texture development and corresponding
microhardness of the HEA at room temperature is demonstrated. The phase transformation leads
to an inhomogeneous microstructure, weakening of the shear texture, and a surprising hardness
anomaly. Reasons for the hardness anomaly are discussed in detail.

Keywords: high-entropy alloy; high-entropy alloy; high pressure torsion; microstructure; texture; phase transformation; strength

Permalink: https://www.hzdr.de/publications/Publ-36033


Generating synthetic shadowgrams with an in-situ plugin in PIConGPU

Carstens, F.-O.; Steiniger, K.; Pausch, R.; Schöbel, S.; Chang, Y.-Y.; Irman, A.; Schramm, U.; Debus, A.

Few-cycle shadowgraphy is a valuable diagnostic for laser-plasma accelerators for obtaining insight into the $\mu$m- and fs-scale relativistic plasma dynamics. To enhance the understanding of experimental shadowgrams, we developed a synthetic shadowgram diagnostic within the fully relativistic particle-in-cell code PIConGPU.
In the shadowgraphy diagnostic, the probe laser is propagated through the plasma using PIConGPU, and then extracted and propagated onto a virtual CCD using an in-situ plugin for PIConGPU based on Fourier optics. The in-situ approach circumvents performance limitations of a post-processing workflow, like storing and loading large output files that result from large-scale laser-plasma simulations.
This poster presents the in-situ plugin and first synthetic shadowgrams from laser wakefield accelerator simulations that are generated by the plugin.

Keywords: Shadowgraphy; Synthetic Diagnostics; In-Situ Plugin; PIConGPU; Laser-Electron Acceleration

  • Poster
    8. Annual MT Meeting, 26.-27.09.2022, Hamburg, Deutschland

Permalink: https://www.hzdr.de/publications/Publ-36032


Curvilinear magnetism: from fundamentals to applications

Makarov, D.

Extending 2D structures into 3D space has become a general trend in multiple disciplines, including electronics, photonics, plasmonics, superconductivity and magnetism [1,2]. This approach provides means to modify conventional or to launch novel functionalities by tailoring curvature and 3D shape of magnetic thin films and nanowires [2,3]. In this talk, we will address fundamentals of curvature-induced effects in magnetism and review current application scenarios. In particular, we will demonstrate that curvature allows tailoring fundamental anisotropic and chiral magnetic interactions [4] and enables fundamentally new non-local chiral symmetry breaking effect [5]. Application potential of geometrically curved magnetic architectures is currently being explored as mechanically reshapeable magnetic field sensors for automotive applications, memory, spin-wave filters, high-speed racetrack memory devices as well as on-skin interactive electronics relying on thin films [6,7] as well as printed magnetic composites [8,9].

[1] P. Gentile et al., Electronic materials with nanoscale curved geometries. Nature Electronics (Review) 5, 551 (2022).
[2] D. Makarov et al., New Dimension in Magnetism and Superconductivity: 3D and Curvilinear Nanoarchitectures. Advanced Materials (Review) 34, 2101758 (2022).
[3] D. Makarov et al., Curvilinear micromagnetism: from fundamentals to applications (Springer, Zurich, 2022).
[4] O. Volkov et al., Experimental observation of exchange-driven chiral effects in curvilinear magnetism. Physical Review Letters 123, 077201 (2019).
[5] D. D. Sheka et al., Nonlocal chiral symmetry breaking in curvilinear magnetic shells. Communications Physics 3, 128 (2020).
[6] J. Ge et al., A bimodal soft electronic skin for tactile and touchless interaction in real time. Nature Communications 10, 4405 (2019).
[7] G. S. Canon Bermudez et al., Electronic-skin compasses for geomagnetic field driven artificial magnetoception and interactive electronics. Nature Electronics 1, 589 (2018).
[8] M. Ha et al., Printable and Stretchable Giant Magnetoresistive Sensors for Highly Compliant and Skin-Conformal Electronics. Advanced Materials 33, 2005521 (2021).
[9] R. Xu et al., Self-healable printed magnetic field sensors using alternating magnetic fields. Nature Communications 13, 6587 (2022).

Keywords: curvature effects in magnetism; curvilinear magnetism; printed electronics; human-machine interfaces

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  • Lecture (others)
    Seminar at the University of Kiel, 25.01.2023, Kiel, Germany

Permalink: https://www.hzdr.de/publications/Publ-36031


Pattering data from NPVE software for Helium Ion Microscopy (HIM) irradiation data

Hlawacek, G.; Fowley, C.; Kuria, J.
Project Member: Fowley, Ciaran; Project Member: Kurian, Jinu; Project Leader: Doudin, Bernard

Pattering data from NPVE software for Helium Ion Microscopy (HIM) irradiation data

Keywords: focused ion beam; helium ion microscopy; nanopatterning; magnetic

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Downloads

Permalink: https://www.hzdr.de/publications/Publ-36030


Fungal bioleaching of metals from industrial wastes

Chakankar, M. V.

Industrial wastes and wastewaters are important secondary sources for many metals. Recovering these metals from such waste streams helps in resource recycling and reduce the environmental burden. Microbial technology offers an economical alternative to traditional metal recovery. Several bacterial and fungal species are reported for metal bioleaching from different industrial wastes. Use of fungi in bioleaching process offers a variety of advantages. The present study provides an overview of fundamental mechanisms of fungal bioleaching and methods used for the same. The case study of two different industrial wastes is also provided.

  • Invited lecture (Conferences) (Online presentation)
    Fungal Diversity and its novel applications, 09.04.2022, Pune, India

Permalink: https://www.hzdr.de/publications/Publ-36029


Metal recovery by bioionflotation using biosurfactants

Chakankar, M. V.; Pollmann, K.; Rudolph, M.

Metal recovery by bioionflotation using biosurfactants

  • Lecture (others) (Online presentation)
    UGC STRIDE Lecture Series- Advances in Life Science Research, 10.02.2022, Kolhapur, India

Permalink: https://www.hzdr.de/publications/Publ-36028


Curvilinear micromagnetism: from fundamentals to applications

Makarov, D.

Extending 2D structures into 3D space has become a general trend in multiple disciplines, including electronics, photonics, plasmonics, superconductivity and magnetism [1,2]. This approach provides means to modify conventional or to launch novel functionalities by tailoring curvature and 3D shape of magnetic thin films and nanowires [2,3]. In this talk, we will address fundamentals of curvature-induced effects in magnetism and discuss realizations of curved low-dimensional architectures and their characterization, which among others resulted in the experimental confirmation of exchange-driven chiral effects [4]. Geometrically curved architectures can support a new chiral symmetry breaking effect: it is essentially non-local and manifests itself even in static spin textures living in curvilinear magnetic nanoshells [5]. The field of curvilinear magnetism was extended towards curvilinear antiferromagnets, offering a novel material science platform for antiferromagnetic spinorbitronics. It was demonstrated that intrinsically achiral 1D curvilinear antiferromagnets behave as a chiral helimagnet with geometrically tunable DMI, orientation of the Neel vector and the helimagnetic phase transition [6]. Application potential of geometrically curved magnetic thin films is currently being explored as mechanically reshapeable magnetic field sensors for automotive applications, memory, spin-wave filters, high-speed racetrack memory devices as well as on-skin interactive electronics [7,8].

References:

[1] P. Gentile et al., Electronic materials with nanoscale curved geometries, Nature Electronics (Review) 5, 551 (2022).
[2] D. Makarov et al., New Dimension in Magnetism and Superconductivity: 3D and Curvilinear Nanoarchitectures, Advanced Materials (Review) 34, 2101758 (2022).
[3] D. Makarov et al., Curvilinear micromagnetism: from fundamentals to applications (Springer, Zurich, 2022). https://link.springer.com/book/10.1007/978-3-031-09086-8
[4] O. Volkov et al., Experimental observation of exchange-driven chiral effects in curvilinear magnetism, Physical Review Letters 123, 077201 (2019).
[5] D. Sheka et al., Nonlocal chiral symmetry breaking in curvilinear magnetic shells, Communications Physics 3, 128 (2020).
[6] O. Pylypovskyi et al., Curvilinear One-Dimensional Antiferromagnets, Nano Letters 20, 8157 (2020).
[7] J. Ge et al., A bimodal soft electronic skin for tactile and touchless interaction in real time, Nature Communications 10, 4405 (2019).
[8] G. S. Canon Bermudez et al., Electronic-skin compasses for geomagnetic field driven artificial magnetoception and interactive electronics, Nature Electronics 1, 589 (2018).

Keywords: curvature effects in magnetism; curvilinear magnetism

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  • Invited lecture (Conferences) (Online presentation)
    8th Quantum Oxide Research Online Meeting (QUOROM-8), 16.02.2023, London, UK

Permalink: https://www.hzdr.de/publications/Publ-36027


Geometrically curved, skin-conformal and self-healable magnetoelectronics

Makarov, D.

Extending 2D structures into 3D space has become a general trend in multiple disciplines, including electronics, photonics, plasmonics, superconductivity and magnetism [1,2,3]. This approach provides means to modify conventional or to launch novel functionalities by tailoring curvature and 3D shape of magnetic thin films and nanowires [3]. In this talk, we will address fundamentals of curvature-induced effects and discuss experimental realisations of geometrically curved low-dimensional architectures and their characterization, which among others resulted in the experimental confirmation of the exchange-driven chiral effects [4]. Geometrically curved magnetic thin films are interesting not only fundamentally. They are the key component of mechanically flexible magnetic field sensors. We will briefly outline activities on shapeable magnetoelectronics [5,6], which includes flexible, stretchable and printable magnetic field sensors for the realisation of human-machine interfaces [7,8], interactive electronics for virtual [9] and augmented [10] reality applications and soft robotics [11] to mention just a few. Very recently, self-healable magnetic field sensors for interactive printed electronics were reported [12]. The presence of the geometrical curvature in a magnetic thin film influences pinning of magnetic domain walls and in this respect it affects the sensitivity of mechanically flexible magnetic field sensors. This is an intimate link between the fundamental topic of curvilinear magnetism and application-oriented activities on shapeable magnetoelectronics. This link will be discussed in the presentation as well.

References
1. P. Gentile et al., Electronic materials with nanoscale curved geometries. Nature Electronics (Review) 5, 551 (2022).
2. D. Makarov et al., Curvilinear micromagnetism: from fundamentals to applications. (Springer, Zurich (2022)). https://link.springer.com/book/10.1007/978-3-031-09086-8
3. D. Makarov et al., New Dimension in Magnetism and Superconductivity: 3D and Curvilinear Nanoarchitectures. Advanced Materials (Review) 34, 2101758 (2022).
4. O. Volkov et al., Experimental observation of exchange-driven chiral effects in curvilinear magnetism. Physical Review Letters 123, 077201 (2019).
5. D. Makarov et al., Shapeable Magnetoelectronics. Appl. Phys. Rev. 3, 011101 (2016).
6. G. S. Canon Bermudez et al., Magnetosensitive e-skins for interactive devices. Advanced Functional Materials (Review) 31, 2007788 (2021).
7. P. Makushko et al., Flexible Magnetoreceptor with Tunable Intrinsic Logic for On-Skin Skin Touchless Human-Machine Interfaces. Adv. Funct. Mater. 31, 2101089 (2021).
8. J. Ge et al., A bimodal soft electronic skin for tactile and touchless interaction in real time. Nature Communications 10, 4405 (2019).
9. G. S. Canon Bermudez et al., Electronic-skin compasses for geomagnetic field driven artificial magnetoception and interactive electronics. Nature Electronics 1, 589 (2018).
10. G. S. Canon Bermudez et al., Magnetosensitive e-skins with directional perception for augmented reality. Science Advances 4, eaao2623 (2018).
11. M. Ha et al., Reconfigurable Magnetic Origami Actuators with On-Board Sensing for Guided Assembly. Advanced Materials 33, 2008751 (2021).
12. R. Xu et al., Self-healable printed magnetic field sensors using alternating magnetic fields. Nature Communications 13, 6587 (2022).

Keywords: curvature effects in magnetism; flexible electronics; printed electronics; human-machine interfaces

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Related publications

  • Invited lecture (Conferences)
    8th International Conference on Superconductivity and Magnetism (ICSM2023), 04.-11.05.2023, Fethiye-Oludeniz, Turkey

Permalink: https://www.hzdr.de/publications/Publ-36026


Curvilinear magnetism: fundamentals and applications

Makarov, D.

In this tutorial, we will review recent activities in the field of curvilinear magnetism. In particular, fundamental aspects on controling anisotropy and chiral responses via geometrical curvature will be discussed. Furthermore, activities on the realization and application scenarios of flexible, stretchable and printed magnetic field sensors will be presented.

Keywords: curvature effects in magnetism; curvilinear magnetism; printed electronics; human-machine interfaces; flexible magnetoelectronics

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  • Invited lecture (Conferences)
    IEEE Advances in Magnetics conference (AIM2023), 15.-18.01.2023, Moena, Italy

Permalink: https://www.hzdr.de/publications/Publ-36025


Small Molecule Radiotracers for PET Imaging of PD-L1 with Copper-64

Krutzek, F.; Donat, C.; Ullrich, M.; Kopka, K.; Stadlbauer, S.

The programmed cell death ligand (PD-L1) is expressed on a number of different tumor entities and inhibits the immune response through binding to PD-1 on T-cells. Immune checkpoint inhibitors (ICI) prevent this blockade and thus can reactivate an immune response. However, only about 30% of the patients respond to an ICI monotherapy. Therefore, clinicians are in need for a non-invasive PET/SPECT radioligand for patient stratification and therapy monitoring.

Based on the structures of non-peptidic PD-L1 inhibitors, six different radiotracers were synthesized and radiolabelled with [64Cu]Cu2+ (HZDR, 30 MeV TR-FLEX cyclotron). Binding affinities were determined on PC3 cells stably overexpressing hPD-L1. For in vivo studies, qualitative PET/CT imaging experiments (nanoSCAN PET/CT, Mediso) were performed in NMRI-FoxN1-nude mice bearing PC3-hPD-L1 and mock xenograted tumors.

Two PD-L1 inhibitors were modified with strongly water-soluble acid groups, hydrophilic linker units and a NODAGA-chelator resulting in six different radioligands. The log(D) values of the copper-64 labelled radiotracers were between –3.17 and –4.15 and binding affinities ranged between 80.5 and 533 nM. Depending on the number and the pattern of sulfonate and phosphonate groups, in vivo experiments showed drastically different pharmacokinetic profiles. The radiotracer with one sulfonate and phosphonate group and the most hydrophobic linker exhibited a short circulation time, renal clearance, good tumor uptake (SUVmax = 3.5) and a distinct contrast between the hPD-L1 and the mock tumor.

In conclusion one PD-L1 radiotracer showed a promising pharmacokinetic profile, which is currently further modified to improve the binding affinity and tumor uptake.

Involved research facilities

  • PET-Center
  • Lecture (Conference) (Online presentation)
    The 8th International Electronic Conference on Medicinal Chemistry, 01.-30.11.2022, Dresden, Deutschland

Permalink: https://www.hzdr.de/publications/Publ-36024


Synthesis and Biological Evaluation of Chelator-Based Small Molecule PET-Radiotracers for Imaging of PD-L1

Krutzek, F.; Donat, C.; Ullrich, M.; Kopka, K.; Stadlbauer, S.

Aim:

The programmed cell death ligand 1 (PD-L1) is overexpressed by various cancers, resulting in a downregulation of the local immune response and therefore enabling further tumor growth.[1] Immune checkpoint inhibitors (ICIs) can reactivate the immune system, however, only 30% of the patients respond to an ICI monotherapy.[2] Since PD-L1 is heterogeneously expressed within and across tumor sites, there is an urgent clinical need for non-invasive diagnostic tools to support the therapeutic decision process. Small molecule-based radiotracers for noninvasive molecular PD-L1 imaging offer improved tissue penetration, fast blood clearance and low immunogenicity over radiolabeled antibodies.

Methods:

Based on a published small molecule PD-L1 inhibitor, 10 different radioligands were synthesized and radiolabeled with copper-64 (HZDR, 30 MeV TR-FLEX cyclotron). Binding affinities were determined on PC3 cells stably overexpressing human PD-L1. For in vivo evaluation, qualitative PET/CT imaging (nanoSCAN PET/CT, Mediso) was performed in NMRI-FoxN1-nude mice bearing PC3-hPD-L1 xenografted tumors.

Results:

Modification of the PD-L1 binding motif with strongly water-solubilizing sulfonate and phosphonate groups, different linker units and a NODAGA-chelator in 21-25 organic synthesis steps (12-13 longest linear sequence) yielded 10 different ligands [3]. The 64Cu-labelled radiotracers exhibited logD values between -3.17 and -4.15 for six ligands of the first series, with dissociation constants (Kd) between 80.5 and 532.8 nM, as determined by saturation binding assays. Depending on the number and pattern of sulfonate and phosphonate groups, the in vivo experiments showed drastically different pharmacokinetic profiles: Compounds bearing a less hydrophilic linker showed improved tumor uptake. Three sulfonates resulted in increased blood circulation times of up to 24 h due to albumin binding increased renal clearance but also low tumor uptake (SUVmax = 1.4). Substitution of one sulfonate with a phosphonate reduced the circulation time to two hours, however, accompanied by mainly hepatobiliary clearance. To achieve predominant renal clearance, a second series of four compounds bearing two phosphonate and one sulfonate groups in the solubilizer unit and larger halogens at the central aryl core for improved tumor uptake were synthesized and are currently tested in vivo.

Conclusion:

Sulfonate groups in the PD-L1 tracers increased circulation times along with renal clearance, while tracers with one phosphonate group reduced the blood circulation time but lead to a more hepatobiliary clearance. Structural modifications to increase the binding affinity and improve tumor uptake are currently ongoing.

References:

[1] M. A. Postow, M. K. Callahan, J. D. Wolchok, J. Clin. Oncol. 2015, 33, 1974-1982.
[2] S. L. Topalian, C. G. Drake, D. M. Pardoll, Cancer Cell 2015, 27, 450-461.
[3] Stadlbauer S., Krutzek F., Kopka K. EP21212444.0, December 6th 2021.

Involved research facilities

  • PET-Center
  • Lecture (Conference)
    20th European Symposium on Radiopharmacy and Radiopharmaceuticals, 24.-27.11.2022, Verona, Italia

Permalink: https://www.hzdr.de/publications/Publ-36023


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