Department of Biophysics


Research

The Biophysics Department conducts interdisciplinary research at the interface of biomolecular function, physical chemistry and radiochemistry. The activities contribute to the Helmholtz Research Programmes Nuclear Safety and Cancer Research in the Helmholtz-Association. We are member of the Cluster of Excellence "Physics of Life" (PoL) in Dresden. 

We are particularly interested in:

  • structural and dynamic aspects of biomembranes
  • conformational transitions in membrane proteins
  • interactions between (radio)metals and biomolecules
  • effects of metals and radionuclides on the metabolism of microorganisms (Televised MDR report)

Education

The Biophysics department participates in the Dresden International Graduate School for Biomedicine and Bioengineering (DIGS-BB) supported by the Excellence Initiative of the German federal and state governments.

Practicals on Molecular Spectroscopy and Calorimetry are offered. The following lectures are held at the technische Universität Dresden and are elgible for the Master Specialization "Soft Condensed Matter and Biological Physics":

  • Biological Thermodynamics (English, summer semester)
  • Biophysical Methods (German, winter semester)

Seminar lectures  for the International BIOTEC-Master Programme,

  • Vibrational Spectroscopy (English)
  • Absorption and Fluorescence Spectroscopy (English)

Experimental Methods

  • Fourier transform infrared spectroscopy
  • Circular dichroism
  • Static and time-resolved fluorescence spectroscopy
  • Calorimetry
  • Mass-Spectroscopy

Spectroscopic data are evaluated in combination with Density Functional Theory to understand photochemoical and photophysical properties of organic complexes of actinides.


Latest publication

An integrative approach toward bio-inspired sequestration of rare earth elements

Perevedentseva, Y.; Waurick, L.; Marlina, D.; Techert, G.; Müllers, Y.; Lederer, F.; Möller, H. M.; Kumke, M. U.; Ulrich, G.; Drobot, B.

Abstract

Despite their important role in the development of renewable energy, the process of obtaining lanthanides (Ln) through conventional mining or through recovery processes is problematic due to their negative impact on the environment. Research into new recovery processes therefore will be crucial to enable cost-effective and environmentally friendly enrichment and separation of Ln, particularly from waste streams or mine water. Many proteins contain specific peptide sequences as metal-binding sites. EF-hand loops are a Ca2+ binding motif in a diverse family of proteins, among them calmodulin (CaM). As it is well known that lanthanides can substitute Ca2+ in proteins, peptides based on the proteinic binding motifs are a promising approach to develop materials for Ln binding, separation and recovery. This study characterizes the CaM-EF-hand 4 (EF4) and its binding behaviour for various lanthanides in detail. Isothermal titration calorimetry (ITC), time-resolved laser fluorescence spectroscopy (TRLFS), nuclear magnetic resonance (NMR) spectroscopy and molecular dynamics (MD) simulations demonstrate a generally high Ln-binding affinity but indicate slightly different binding constants for different Ln to EF4 (DIDGDGQVNYEE). In addition, thermodynamic, structural and coordination effects upon binding are investigated. The isolated peptide possesses a much higher flexibility than the loop within the protein. Under certain conditions, multiple complex stoichiometries, 1:1 and 2:1 (Ln3+:peptide), are detected. Finally, immobilized EF4 is used to demonstrate the extraction and recovery of Sm3+ from aqueous solution. Overall, the EF4 loop motif of calmodulin turns out to be a promising biological ligand for lanthanide extraction.

Keywords: metal-binding peptides; lanthanide-binding peptides; EF-Hand loop; calmodulin; peptide dynamics

Related publications

Permalink: https://www.hzdr.de/publications/Publ-42514


More publications


Team


Head

NameBld./Office+49 351 260Email
Dr. Björn Drobot801/P3022978
b.drobotAthzdr.de

Employees

NameBld./Office+49 351 260Email
Dr. Lisa Nucke801/P3033375
l.nuckeAthzdr.de
Prof. Dr. Satoru Tsushima801/P3022978
s.tsushimaAthzdr.de

Physical Chemistry of Biomolecular Condensates

Head

NameBld./Office+49 351 260Email
Dr. Ellen Adams801/P3012911
e.adamsAthzdr.de

Employees

NameBld./Office+49 351 260Email
Likhitha Chakra Priya Pulibandla801/P3033375
l.pulibandlaAthzdr.de
Manthan Rajm.rajAthzdr.de